Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00581 ATGCAAGCTTGTAGTGGAGTCGCAATGATGGGTTCTCTGCAACAACCCATGTGGACCAAGGGGCTGAATTCTGCTGCAAAAGGGTGGGGCAATAATGGATTTGTACCTCAAGTAAGGCTCTACAATGTGAATCCGTGTAAAGCATCTTATGTTGAAGGAAGCTTGGTCACTGGGAGACCATCAACTCTCTCTGTACCAGTGCCTGGAGGCGATGGAAATAGTTTCGTAGACTATGGCTTGAGTGACGCCGATCCTGAGGTGCGTGCAATTATAGACAAGGAAAAAGAACGACAATTCAAGAGCCTTGAGCTTATTGCCTCCGAAAATTTTACATCTAAAGCAGTGATGGAAGCAGTTGGTTCATGCCTTACGAACAAGTACTCTGAAGGGCTACCTGGTAAAAGGTACTACGGCGGCAATGAGATAATAGATGAGCTTGAAATATTATGTCAGCAAAGGGCATTGGCTGCATTTCACTTAGATGGAACAGAGTGGGGTGTAAATGTTCAACCGTTATCTGGTTCTCCAGCTAATTTTGCAGTTTACACTGCAATTCTTAATCCACATGATCGGATAATGGGCCTAGACTTGCCTCATGGGGGACATTTGTCTCACGGATTCATGACTCCTAAGAGACGTGTATCAGCCAcctcaatttattttgagtCTATGCCTTATCGACTTGATGAATCAACAGGTCTTATTGATTATGATACACTTGAGAAGACAGCTAACCTCTTCCGGCCAAAACTTATAATTGCTGGTGCTAGTGCTTATCCTCGAGACATTGACTATCCTCGCATGAGGAAGATTGCAGATGAAGTAGGTGCTTTTCTTATGATGGATATGGCTCACATAAGTGGACTTATTGCTGCTTCTGTGCTTGCTAGTCCCTTCGAGTTCTGTGATATTGTGACAACCACAACCCACAAGTCTCTGAGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGACCCCGTGCTTCGAGTTGATCTAGAGTCTGCCATTAACAATGCTGTTTTTCCAGGTCTACAGGGAGGTCCTCATAACCACACCATTGGAGGACTCTCAACTTGCCTCAAGCTTGCGCAATCACCAGAGTTTAAAGCTTACCAAAACCAgGTGGTCTCTAACTGTAAAGCTCATGCCAGTAGATTAATGGAACATGGGTACAAATTGGTTTCTGGTGGAAGTGATAATCACCTGGTTCTTGTCGACTTGAGGCCATCTGGAATTGATGGTGCTCGCGTGGAGAAAATCCTTGACATGGCTTCCATaactcttaataaaaattcagtgCCTGGTGACAAGAGCGCCCTAGTGCCGGGAGGCATCCGCATTGGAACACCTGCAATGACAACTAGAGGatttaaagagaaagaatttgtATTGACCGCAGACTTGATTCATGAGGGTGTGCAAATAGCACTTGAAGCCGTAGCTCAAGCCCCAGGATCAAAGCTCCAAGATTTTCTGAAGTTTGTGTCATCTCCTGAATTTCTTTTGAGGGATCAGGTTTCTGACTTGCGTGACAGAGTTGAAGGGTTTACGACCAAATATCCAATTCCTGGATTCTA 1580 0.4348 MQACSGVAMMGSLQQPMWTKGLNSAAKGWGNNGFVPQVRLYNVNPCKASYVEGSLVTGRPSTLSVPVPGGDGNSFVDYGLSDADPEVRAIIDKEKERQFKSLELIASENFTSKAVMEAVGSCLTNKYSEGLPGKRYYGGNEIIDELEILCQQRALAAFHLDGTEWGVNVQPLSGSPANFAVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSATSIYFESMPYRLDESTGLIDYDTLEKTANLFRPKLIIAGASAYPRDIDYPRMRKIADEVGAFLMMDMAHISGLIAASVLASPFEFCDIVTTTTHKSLRGPRGGMIFFKKDPVLRVDLESAINNAVFPGLQGGPHNHTIGGLSTCLKLAQSPEFKAYQNQVVSNCKAHASRLMEHGYKLVSGGSDNHLVLVDLRPSGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGTPAMTTRGFKEKEFVLTADLIHEGVQIALEAVAQAPGSKLQDFLKFVSSPEFLLRDQVSDLRDRVEGFTTKYPIPGF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00581 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 41 525 - -
Bva10g00581 526 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 41 525 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva10g00581 526 CDD SHMT 82 477 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva10g00581 526 SUPERFAMILY PLP-dependent transferases 79 525 IPR015424 -
Bva10g00581 526 Pfam Serine hydroxymethyltransferase 80 469 IPR039429 -
Bva10g00581 526 Hamap Serine hydroxymethyltransferase [glyA]. 79 525 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva10g00581 526 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 303 319 IPR019798 GO:0030170
Bva10g00581 526 Gene3D Aspartate Aminotransferase, domain 1 84 524 IPR015422 GO:0003824
Bva10g00581 526 PIRSF SHMT 75 526 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva10g00581 526 Gene3D - 109 374 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00581 Bva-Chr10 5224239 5228112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00581 K00600 - qsu:111987008 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00581 10 5224239 5228112 Bva10g00581 10 5224239 5228112 ECH