Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00579 ATGTCTCTCCTCAACCGGACGTCCTCGCGCCTCCCACATCTGGTGTCGCCTCAACGGATAGTTTCCCTTCACACCACCCATCCCTCTATGTCATCCACCGCGGCTTCCGGCAGTGCTACACCGACACCATATGCTCGGCCACCTTCACCGTCGACTTCCTCTCAAACTGGTCTTCCCAAGGCGGCGGAGTACGTGATCTCCAAGGTTGATGATCTCTTGAACTGGGCAAGGCGTGGTTCCATTTGGCCCATGACCTTTGGCCTTGCCTGCTGCGCAGTCGAAATGATGCACACCGGAGCCGCCCGCTACGATCTCGACCGATTCGGGATCATTTTCAGACCCAGTCCCCGTCAGTCCGATTGCATGATTGTTGCTGGCACTCTCACCAATAAGATGGCCCCTGCCCTTCGCAAGGTTTATGACCAAATGCCTGAGCCGAGGTGGGTTATCTCTATGGGAAGTTGTGCTAACGGAGGAGGATACTACCACTACTCCTACTCTGTTGTTCGAGGATGCGACAGGATTGTTCCTGTTGACATATATGTTCCTGGTTGTCCTCCAACTGCTGAGGCTTTACTATATGGACTCCTCCAGCTGCAGAAGAAGATCAATAGACGCAAGGACTTCCTTCTTTGGTGGACAAAGTG 647 0.5379 MSLLNRTSSRLPHLVSPQRIVSLHTTHPSMSSTAASGSATPTPYARPPSPSTSSQTGLPKAAEYVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWTK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00579 215 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 171 187 IPR006138 GO:0008137|GO:0048038|GO:0051539
Bva10g00579 215 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 90 199 IPR006137 GO:0051536
Bva10g00579 215 SUPERFAMILY HydA/Nqo6-like 63 207 - -
Bva10g00579 215 Gene3D - 61 215 - -
Bva10g00579 215 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 65 205 IPR006138 GO:0008137|GO:0048038|GO:0051539
Bva10g00579 215 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 56 204 IPR006138 GO:0008137|GO:0048038|GO:0051539
Bva10g00579 215 MobiDBLite consensus disorder prediction 25 57 - -
Bva10g00579 215 PANTHER NADH DEHYDROGENASE 1 215 - -
Bva10g00579 215 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 1 215 - -
Bva10g00579 215 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00579 Bva-Chr10 5212067 5212483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00579 K03940 - gmx:100802267 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00579 10 5212067 5212483 Bva06g02220 06 14548719 14551135 BWGD
Bva10g00579 10 5212067 5212483 Bva10g00579 10 5212067 5212483 ECH