Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00565 ATGGAACGTGCTAGGCGGCTTGCTAACCGGGCGATACTGAAACGCCTGGTCTCGGAGGCTAAGCAGTTCGGCCAGAATGAATCTCTGTTGAACTCTTCGACCCCTGTGTTGTATACACCTTCCAGGTACGTGTTATCTCTTTCTCCCTCTGCTTTCAGAGGCAGAGGGTCTAAGGCAGAGAACTTGCTGGGCAGGAATGCGTCACGTAATGTTAGTTTTGGTGTTGGGTCCCAAACCCGATCGATTTCGGTCGAGGCACTCAAATCCAGTGACACTTTTCCTCGACGCCATAACTCTGCCACCCCAGAAGAACAGAGCAAAATGGCTCAGTCATGTGGGTTCGATACGCTTGATTCGCTTATTGATGCTACTGTGCCTAAATCGATCCggataaaagaaatgaagttttgTAAGTTTGATGAGGGGTTGACAGAGAGCCAAATGATCCAGCACATGCAAGATTTGGCGTCTAAGAACAAGGTCTTCAAGTCTTATATTGGGATGGGGTACTATGACACTCATGTTCCGCCTGTGATTTTGAGGAACATAATGGAAAATCCAGCATGGTACACCCAATACACTCCTTACCAAGCTGAGATATCACAAGGACGTCTTGAGTCTTTGCTCAATTATCAGACCATGATCACAGATCTTACTGGTCTTCCCATGTCAAATGCTTCATTGCTCGATGAAGGAACTGCCGCTGCTGAGGCAATGTCTATGTGTAATAATATTcagaagggaaagaaaaagactttTATAATTGCAAGTAATTGCCATCCGCAGACCATTGATATTTGTAAGACAAGAGCGGGTGGTTTTGATCTTAAGGTAGTCACTGAAGATCTTAAGGATATTGATTATAAATCAGGTGATGTTTGTGGTGTGCTTGTTCAGTACCCTGGTACTGACGGTGAGATTTTGGATTACGGGGAGTTCATCAAGAAAGCTCATGCTCATGGAGTCAAGGTTGTTATGGCAACCGATCTCTTGGCGTTGACAGTCTTGAAGCCTCCTGGTGAACTGGGGGCAGATATTGTTGTCGGCTCAGCTCAGAGGTTCGGGGTTCCCATGGGTTATGGAGGTCCTCATGCAGCATTCCTCGCCACTTCCCAGGAGTACAAGCGGATGATGCCAGGAAGAATTATCGGTGTTAGTGTTGATTCTTCTGGAAAGCCAGCCTTGCGAATGGCTATGCAGACTAGAGAACAACATATCCGTAGGGACAAGGCTACAAGCAATATTTGCACAGCTCAGGCACTTCTTGCAAACATGGCTGCTATGTATGCCGTTTACCATGGATCTGAAGGCCTTAAAACCATTGCCCAACGTGTTCATGGTCTTGCTGGGGTATTTGCACTTGGACTAAAGAAACTTGGAACAGTGGAAGTTCAGAACCTCCCCTTCTTTGACACCGTGAAGGTTAAGGCTGCCAATGCCCATGCAATTGCGGATGCTGCTTacaaaagtgaaataaatttGCGTGTTGTAGATGGAAACAcaATCACTGTTTCCTTTGATGAAACAACCACCGTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTAGCAAGCCaATCTCCTTCACTGCTGCATCTCTTGCACCAGATGTTGAGAACGCGCTTCCTTCTGGACTGATTAGGAAGAGCCCTTATCTGACACACCCCATATTTAACACGTACCACACAGAACATGAGTTGCTCAGATATATTCATAGGCTACAATCAAAGGATCTTTCACTATGCCACAGTATGATACCACTGGGATCTTGTACAATGAAGCTGAATGCAACAACCGAGATGATGCCTGTGACTTGGCCTGGCTTTACTAATATTCACCCTTTTGCACCGACTGAACAGGCTCAAGGCTATcagGAAATGTTCCAAAATCTGGGTAATCTCTTGTGTACCATCACTGGGTttgattctttctctttgcaaCCTAACGCTGGTGCTGCTGGAGAATACGCTGGACTGATGGTTATTCGTGCTTATCATATGGCTAGAGGAGACCACCATCGCAATGTTTGCATTATACCTGTGTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTGTCTGTTGGAACTGATGCCAAGGGTAATATCAACATTGAAGAGTTGAGGAAGGCTGCTGAAACCCATAAGGACAACTTATCTGCTCTCATGgtaACATATCCTTCAACCCACGGTGTTTATGAAGAAGGTATCGATGAGATATGCAAGATCATTCATGATAACGGAGGCCAAGTATATATGGATGGTGCTAACATGAATGCTCAGGTGGGACTCACAAGTCCAGGTTGGATCGGAGCAGATGTTTGCCATCTCAATCTTCATAAGACATTTTGCATCCCTCATGGTGGAGGTGGTCCTGGAATGGGCCCTATTGGTGTGAAAAAACACTTGGCACCATTTTTACCTTCGCATCCTGTGATCGCCACTGGTGGCATACCTGCCCCTGACAAGGCTCAACCACTCGGTACCATTTCTGCTGCACCTTGGGGCTCAGCACTGATATTGCCAATCTCTTATACTTACGTAGCCATGATGGGCTCTAAAGGACTCACAGAGGCATCTAAGATAGCGATTCTAAATGCAAACTACATGGCAAAACGACTGGAGAATTATTACCCAGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCCCATGAGTTCATCATTGACTTAAGAGGCTTTAAGAATACCGCTGGGATAGAGCCCGAAGATGTTGCAAAGCGCCTTATGGACTATGGGTTTCATGGACCAACAATGTCATGGCCTGTCCCCGGCACACTCATGATCGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTGTTGATGCTCTCATTTCCATAAGGGAGGAAATTGCTGCGATTGAGAAAGGAAAAGCCGATATCAGCAACAATGTCCTTAAGGGAGCCCCTCACCCACCATCACTGCTCATGGGAGATACATGGACCAAACCATATTCCCGGGATTATGCAGCCTTCCCTGCTGCCTGGCTCCGTGTTTCAAAGTTCTGGCCCAGTACAGGACGCGTTGACAATGTGTACGGTGACCGCAACCTCGTCTGCACTCTTCAACCAGCATCCCATGTTGTCGAAGAACAAGCTGCTGCAACAGCTTA 3161 0.453 MERARRLANRAILKRLVSEAKQFGQNESLLNSSTPVLYTPSRYVLSLSPSAFRGRGSKAENLLGRNASRNVSFGVGSQTRSISVEALKSSDTFPRRHNSATPEEQSKMAQSCGFDTLDSLIDATVPKSIRIKEMKFCKFDEGLTESQMIQHMQDLASKNKVFKSYIGMGYYDTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRAGGFDLKVVTEDLKDIDYKSGDVCGVLVQYPGTDGEILDYGEFIKKAHAHGVKVVMATDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGSEGLKTIAQRVHGLAGVFALGLKKLGTVEVQNLPFFDTVKVKAANAHAIADAAYKSEINLRVVDGNTITVSFDETTTVEDVDKLFKVFAGSKPISFTAASLAPDVENALPSGLIRKSPYLTHPIFNTYHTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPGFTNIHPFAPTEQAQGYQEMFQNLGNLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHMARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVIATGGIPAPDKAQPLGTISAAPWGSALILPISYTYVAMMGSKGLTEASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFVDALISIREEIAAIEKGKADISNNVLKGAPHPPSLLMGDTWTKPYSRDYAAFPAAWLRVSKFWPSTGRVDNVYGDRNLVCTLQPASHVVEEQAAATA 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00565 1053 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 87 1044 IPR003437 GO:0004375|GO:0006544
Bva10g00565 1053 Gene3D Aspartate Aminotransferase, domain 1 856 991 IPR015422 GO:0003824
Bva10g00565 1053 Gene3D - 603 855 IPR015421 GO:0003824
Bva10g00565 1053 Gene3D - 176 436 IPR015421 GO:0003824
Bva10g00565 1053 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1053 IPR020581 GO:0004375|GO:0006546
Bva10g00565 1053 Coils Coil 712 732 - -
Bva10g00565 1053 SUPERFAMILY PLP-dependent transferases 556 1039 IPR015424 -
Bva10g00565 1053 TIGRFAM gcvP: glycine dehydrogenase 96 1037 IPR003437 GO:0004375|GO:0006544
Bva10g00565 1053 SUPERFAMILY PLP-dependent transferases 96 522 IPR015424 -
Bva10g00565 1053 CDD GDC-P 565 960 IPR020581 GO:0004375|GO:0006546
Bva10g00565 1053 CDD GDC-P 145 522 IPR020581 GO:0004375|GO:0006546
Bva10g00565 1053 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1053 - -
Bva10g00565 1053 MobiDBLite consensus disorder prediction 88 108 - -
Bva10g00565 1053 Gene3D Aspartate Aminotransferase, domain 1 165 518 IPR015422 GO:0003824
Bva10g00565 1053 Pfam Glycine cleavage system P-protein 96 522 IPR020581 GO:0004375|GO:0006546
Bva10g00565 1053 Pfam Glycine cleavage system P-protein 542 815 IPR020581 GO:0004375|GO:0006546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00565 Bva-Chr10 5148015 5153525 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00565 K00281 - gmx:100777528 1893.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00565 10 5148015 5153525 Bva06g02231 06 14600782 14606984 BWGD