Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00558 ATGTCTTGGAGGCGTTTGATAACGCAGGTTTCAAGTCGTCAAACAGAATTTCAAcagttcaaaaatttatttgccaGAACCTATTTATCTACCAATAAGTTTGAAGCTCATGCAGGGAATAGGCCTTTGTACAATCAAGAGAGATTTCGGTCCAGCTATGTTGGTAATTTAGCTCGTCGAGTACGTGATGCAGATGATGCCAGTGAAGTTGCCCATCTTAAAGAACTTTACCGTCGAAATGATCCTGAATCTGTGATTAGACTATTTGAAAGTCAGCCATCTCTGCACAATAATACGGCAGCACTTTCTGAATACGTCAAAGCATTAGTTAAAGTTGATAGGTTGGACGAAAGTGAATTACTGAAGACATTGCGTAGAGGTATATCTAATTCAGtaagggaagaagaaagtgTAGGCAGCCTTTCTGCTTTTGGAAATGTGGGGAAATCTACAAAAGATGGAGTTCTTGGAACTGCAAGTGCTCCTATTCATATGGtggaaactgcaaattttaaAGAGCAGTTGTGGCGTACAATTAGGACCATTGCAGTGGCCTTTCTCTGGATTTCTGGTATTGGAGCACTCATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATGAACGAAGAAGTGCAACCCAGTATGGAATCAAGTACAAAATTTAACGATGTAAAAGGGGTTGATGAAGCAAAAGCAGAGCTAGAAGAAATTGTTCACTACCTTCGAGATCCTAAGCGCTTTACTCGTCTTGGTGGTAAGCTCCCAAAAGGTGTTTTGCTCGTTGGCCCTCCTGGAACTGGAAAAACAATGTTGGCGAGAGCTATAGCTGGAGAAGCAGGAGTTCCTTTCTTCTCCTGCAGTGGAAGTGAGTTTGAAGAGATGTTTGTTGGTGTTGGAGCACGAAGGGTGAGGGATCTCTTTGCTGCTGCAAAGAAGCGATCACCTTGTATAATCTTCATTGATGAGATTGATGCTATTGGAGGAAGTCGAAATTGGAAGGACCAGATGTACATGAAGATGACATTAAATCAGTTGCTGGTCGAACTAGATGGGTTCAAGCAAAATGAAGGTATAATTGTGATTGCAGCCACTAATTTCCCAGAGTCATTGGATAAGGCTTTGGTGAGGCCTGGGCGGTTTGATCGCCATGTCGTTGTTCCCAATCCAGATGTTGAAGGAAGGCGGCAGATTCTTGAGTCCCACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATTTAATGATTATTGCTCGAGGAACGCCTGGGTTCTCTGGTGCTGACCTTGCAAATATAGTTAACGTTGCGGCTCTGAAAGCTGCAATGGATGGTGCAAAAGCTGTGAGCATGTTTGATTTGGAGTATGCGAAGGACAAGATTATGATGGGAAGTGAACGCAAATCTGCTGTCATATCTGAGGAGTCGAGAAGGATGACTGCTTACCATGAGGGTGGCCATGCCCTCGTGGCTGTTCATACTGATGGGGCACTTCCTGTTCACAAGGCCACAATAGTTCCCCGAGGGATGGCTCTTGGCATGGTTTCTCAGTTGCCTGACAAGGATCAGACTAGTACCTCTCGTAAACAGATGCTTGCCCGGCTTGATGTTTCCATGGGAGGGCGGGTTGCTGAAGAGCTTATTTTTGGAGAAAGTGAAGTTACTTCTGGTGCATCGTCTGATCTCGAGCATGCAACTGCCATTGCTAGGGCAATGGTTACGAAATATGGTATGAGCAAAGAAGTTGGATTTGCCACTCACGATTATGATGACAATGGGAGAAGCATGAGCACAGAAACCAGGCTGCTTATTGAGAAAGAAGTGAAGAACTTTCTGGAGAGGGCTTACAACAATGCAAAAACTATTCTTACCACCCACAATAAAGAGCTTCATGCGCTGGCAAATGCTCTACTGGAGCATGAGACGCTGACTGGAAGTCAGATAAAGGCTTTGCTTGCACAGGTCAATTCGCAGCAACAGCAACCGCAAAAGGTTGAAGCACAAGACAGCTCACAGTCCAAGCCGGTGCATCCACCTTCTAGCCCAGCATCAACTGCCGCTGCAGCGGCCGCGGCTGCAGCAGCTGCAGCTACTGCTGCTGCGAAAGCTAAAGGTGTTGCATCAGTTGGATCCTA 2129 0.4415 MSWRRLITQVSSRQTEFQQFKNLFARTYLSTNKFEAHAGNRPLYNQERFRSSYVGNLARRVRDADDASEVAHLKELYRRNDPESVIRLFESQPSLHNNTAALSEYVKALVKVDRLDESELLKTLRRGISNSVREEESVGSLSAFGNVGKSTKDGVLGTASAPIHMVETANFKEQLWRTIRTIAVAFLWISGIGALIEDKGISKGLGMNEEVQPSMESSTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFIDEIDAIGGSRNWKDQMYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVLKADDVDLMIIARGTPGFSGADLANIVNVAALKAAMDGAKAVSMFDLEYAKDKIMMGSERKSAVISEESRRMTAYHEGGHALVAVHTDGALPVHKATIVPRGMALGMVSQLPDKDQTSTSRKQMLARLDVSMGGRVAEELIFGESEVTSGASSDLEHATAIARAMVTKYGMSKEVGFATHDYDDNGRSMSTETRLLIEKEVKNFLERAYNNAKTILTTHNKELHALANALLEHETLTGSQIKALLAQVNSQQQQPQKVEAQDSSQSKPVHPPSSPASTAAAAAAAAAAAATAAAKAKGVASVGS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00558 709 MobiDBLite consensus disorder prediction 657 684 - -
Bva10g00558 709 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Bva10g00558 709 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 212 650 IPR005936 GO:0004176|GO:0004222|GO:0016020
Bva10g00558 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 482 IPR027417 -
Bva10g00558 709 PANTHER METALLOPROTEASE M41 FTSH 10 682 - -
Bva10g00558 709 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 669 IPR005936 GO:0004176|GO:0004222|GO:0016020
Bva10g00558 709 Gene3D - 389 462 - -
Bva10g00558 709 Gene3D Peptidase M41 463 661 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bva10g00558 709 SMART AAA_5 254 390 IPR003593 -
Bva10g00558 709 Pfam ATPase family associated with various cellular activities (AAA) 258 387 IPR003959 GO:0005524|GO:0016887
Bva10g00558 709 Pfam AAA+ lid domain 410 451 IPR041569 -
Bva10g00558 709 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 10 682 - -
Bva10g00558 709 MobiDBLite consensus disorder prediction 657 678 - -
Bva10g00558 709 Gene3D - 205 388 IPR027417 -
Bva10g00558 709 CDD AAA 255 387 - -
Bva10g00558 709 SUPERFAMILY FtsH protease domain-like 469 654 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bva10g00558 709 Pfam Peptidase family M41 469 648 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00558 Bva-Chr10 5115551 5120525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00558 42 650 Miscellaneous Gene Families AT5G53170 50.313 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00558 K08955 - jre:109020493 1087.79