Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00523 ATGGCTCTGCCGGTCCGAAATACCGTGGCCaagctttcttcttccacACCTTCAAACCTCTCCCTTGTTGCATCCATAACCTCGATCCTTCAAACCCTGAATCCCCAAGATTCAGATACCTCGAATCTCAACCCAGAACCCCTTAAGCAATTCTCATCTAATCTAAATCCAAACTTAGTTATACAAGTGATTAAGAACCAGAACAACCCCTACCAtgctctcttcttcttcaactggGCTTCCAGGCCCGTGCCCAATcccaataattattttcatactcATTTGTGTTATGTGGTAATCACTGATGTGTTACTTTCTCAATCTCTTATATCAACGGCCTACACGCTCCTTCAAAAGTCGCACAAACTCTCTGATTTCATGTTCGGTAGATTTATTAAAGCTTTTGGTGATCGTGGCGACGTTAGAGGTGCTATTGACTGGTTCCACAAAGCCAAATCTTTTGAAAGTGGTCGTTGTCTGTTCTCTTATAATGCCGTATTGGGTGTGTTAGTGAGAGCAAATCGAGTAAATTTGGCCAAAGCTTTCTATGATCAGATTGTAAAGGAAGAATTGGTGAAACCCGACGATTTCACTTACACGACAATGATCAGGGGTTTCTGCAAAATGGACATGATTGAGAATGCGAGGAAGGTGTTCGACGAAATGTCCTGTGAGCCCAATTTGGTTACCTACAACACATTGATTGATGGCTTTTGTAAGAAAGGTGATCTCGAGAGTTCCAGGGGGATTCTTAATCGAATGATGCAAAGTAAGACTTATTTACCAGATGTTGTGACTTATTCGACTTTGATAGATGGGTATTGCAAGAAGGGTGAAATCCATGAGGCAATGAATTGCATGGAGGAGATGGTGAAACAAGGCTGTCAGCCAAATGTCTTAACATACAATTCGTTGATAGAAGGTCTTTGTTTGACTGCAAATGTGGATGAAGCGAAGAGAATGATGACTAGAATGCGCTTAAATGGCTTAAAAGATGATGTTACCACACATACTAGCATATTAAAGGGGTTCTGCATAGCGGGAAGGTCCAGTGAAGCTATCAAGCATTTGGGATG 1076 0.3968 MALPVRNTVAKLSSSTPSNLSLVASITSILQTLNPQDSDTSNLNPEPLKQFSSNLNPNLVIQVIKNQNNPYHALFFFNWASRPVPNPNNYFHTHLCYVVITDVLLSQSLISTAYTLLQKSHKLSDFMFGRFIKAFGDRGDVRGAIDWFHKAKSFESGRCLFSYNAVLGVLVRANRVNLAKAFYDQIVKEELVKPDDFTYTTMIRGFCKMDMIENARKVFDEMSCEPNLVTYNTLIDGFCKKGDLESSRGILNRMMQSKTYLPDVVTYSTLIDGYCKKGEIHEAMNCMEEMVKQGCQPNVLTYNSLIEGLCLTANVDEAKRMMTRMRLNGLKDDVTTHTSILKGFCIAGRSSEAIKHLG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00523 358 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 357 - -
Bva10g00523 358 Gene3D Tetratricopeptide repeat domain 24 223 IPR011990 GO:0005515
Bva10g00523 358 Gene3D Tetratricopeptide repeat domain 291 357 IPR011990 GO:0005515
Bva10g00523 358 Gene3D Tetratricopeptide repeat domain 224 290 IPR011990 GO:0005515
Bva10g00523 358 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Bva10g00523 358 TIGRFAM PPR: pentatricopeptide repeat domain 197 224 IPR002885 -
Bva10g00523 358 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Bva10g00523 358 TIGRFAM PPR: pentatricopeptide repeat domain 229 260 IPR002885 -
Bva10g00523 358 TIGRFAM PPR: pentatricopeptide repeat domain 301 330 IPR002885 -
Bva10g00523 358 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Bva10g00523 358 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 262 IPR002885 -
Bva10g00523 358 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 225 IPR002885 -
Bva10g00523 358 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bva10g00523 358 Pfam PPR repeat 223 254 IPR002885 -
Bva10g00523 358 Pfam PPR repeat 336 355 IPR002885 -
Bva10g00523 358 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 13 357 - -
Bva10g00523 358 Pfam PPR repeat family 160 208 IPR002885 -
Bva10g00523 358 Pfam PPR repeat family 262 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00523 Bva-Chr10 4962572 4965036 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00523 161 358 Glycosyltransferase AT1G05670 35.821 1.78e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00523 - - pmum:103320658 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00523 10 4962572 4965036 Bva10g00523 10 4962572 4965036 ECH