Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00516 ATGGGTGAAGCCCCGCAGGTGTTTTACGTCAATGGCTACTCAAAATATGGCCACGAAACTGATGAAAACCTCGTCAACGATCAGAACCAGCTGCATGATTCGTGGTATGAAGAAGTGATCGACCATGATCTCAAATGGTCTTTTTCGTTGAATAGCGTGCTTCATAAAGGGATTAGCGAGTACCAGGAGATAGCCCTGTTAGACACAAAGCGTTTTGGCAAGGCGTTGGTGATTGATGGGAAGATGCAGAGTGCTGAAATAGATGAATTCATATATCACGAATGTTTGATTCATCCAGCTCTCTTATGTCACCCCAACCCCAAAACGGTATTTATAATGGGAGGAGGCGAAGGTTCCGCTGCCAGGGAAGCACTCAAGCACAAGTCAATGGAGAGAGTAATTATGTGCGACATAGACCAGGAGGTGGTAGATTTCTGCCGTCAATACTTGACTGTAAATAGGGAAGCCTTTTCTCATAAGAAGCTCGACCTTGTCATCAATTGTGCCAAGGCCGaattagagaagagaaaggagaagTTTGATATCATAGTTGGGGATTTAGCAGACCCAGTTGAAGGAGGACCTTGTTATCAACTCTATACCAAATCCTTCTATGAGAAAATCCTCAAGCCCAAGCTGAACGAGAATGGTATTTTTGTGAcacagGCTGGACCCGCAGGCATCTTCACACACAAGGAGGTTTTCACTTCCATATATAACACAATTAAACAAGTCTTTAAATATGTGATGGTCTACACAACGCACATACCATCTTTTGCTGACACCTGGGGATGGGTTATGGCCTCCGACCAACCATTCTCAATCAGTGCCGAGGAAATGGACAAAAGAATCCAAACAAGAATAGATGGGGAATTGCTCTATCTAAATGGCCACTGGTTCCACTCCTCTACCATCGTGAATAAGGCCGTTTTTCAATCgCTGCAGAACGAAACTCATGTGTACACCGAAGAAAACGCAAGATTCATTCATGGCCATGGTGTGGCTTGTCGAATTTA 1016 0.4301 MGEAPQVFYVNGYSKYGHETDENLVNDQNQLHDSWYEEVIDHDLKWSFSLNSVLHKGISEYQEIALLDTKRFGKALVIDGKMQSAEIDEFIYHECLIHPALLCHPNPKTVFIMGGGEGSAAREALKHKSMERVIMCDIDQEVVDFCRQYLTVNREAFSHKKLDLVINCAKAELEKRKEKFDIIVGDLADPVEGGPCYQLYTKSFYEKILKPKLNENGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVMVYTTHIPSFADTWGWVMASDQPFSISAEEMDKRIQTRIDGELLYLNGHWFHSSTIVNKAVFQSLQNETHVYTEENARFIHGHGVACRI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00516 338 Gene3D Spermidine synthase, tetramerisation domain 33 85 IPR037163 -
Bva10g00516 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 33 270 IPR030374 -
Bva10g00516 338 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 337 - -
Bva10g00516 338 CDD AdoMet_MTases 114 222 - -
Bva10g00516 338 Hamap Polyamine aminopropyltransferase [speE]. 34 323 IPR001045 GO:0003824
Bva10g00516 338 Gene3D Vaccinia Virus protein VP39 86 338 IPR029063 -
Bva10g00516 338 Pfam Spermidine synthase tetramerisation domain 35 86 IPR035246 -
Bva10g00516 338 PANTHER BNAA02G04280D PROTEIN 1 337 - -
Bva10g00516 338 Pfam Spermine/spermidine synthase domain 89 267 - -
Bva10g00516 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 34 314 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00516 Bva-Chr10 4934468 4937482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00516 K18787 - gmx:100784972 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00516 10 4934468 4937482 Bva10g00516 10 4934468 4937482 ECH