Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00485 ATGTTGGGTGACGACGACGATCTCCAGATCCCTCTTACCCAGACAACAATTTCTCCCAAATCTATTAGTTCTCAAGAACCCCTCAAACCCTTTAATTTCACTCACCGCGCAACCAAGAAACACAAACGTTCAAGTGCTCCCATTTTCGTTGGCAAGGAAAATGTGCCTCCTCCTTTTGAGGGAAATTCGTCCTTGTCTAAAACAATGCACAGGACTACTCTCAGATCCAATGGAATGTCGAGTTACAGTTGCGTGCCGTCTTTGGTAGATAGCGAGAGATATAGAGCAGATGAAAACTGTAGCTTGGATTTCATTCCGTCGAGCATAGATTGTGGCGAATACAAGGTCGACACTGTAGACTTGAGAGAAGAGACAGTTTCTGACGGTGATAAGGTTTATTCCTCTCCGTCCGATGACAAAAAGGAACTGAAAATTAAGGGGGGTTACCTTCGCAATTCTATAGAGTCGAGATTGATAGTGTCGCGTGACTCCTTCAATGCTGCGGGAGATGGCGAATTTGAGACTGATTCAGAGCTTGATCTGTTGCTCAATCTGTGCTCTGAATTAGACGAATCAGACAGTTCTGTGGCTCTCGCATCTCATCATCAGGAAAGAGATACATTGCACAGTAATAGCGTTAGAGGGTTGGTTCGTTGTCCTCTTTGTGGAATTGACATTTCGGACTTAACGGAAGAACAACGATATGTTCATACCAATGATTGTCTTGACAAAGGAGAAAGTCGAGATCAGGAGGTTATTCTTCCTGATGATGCGATGAGCCCTCAACTGTTGCCAGTGCCACAAGTTGTCAATTCCTCTCCTGTTATTGATTGGTTACATAATCTCGGCCTAGGAAAATATGAAGATGTTTTTGTGAGAGAAGAAGTCGATTGGGACACTTTGCAGTGGCTAACAGAAGAGGATCTCTCAAGCATGGGTATTACTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCCCTATGCGAGCTTAGAAAACAGGCTGCTCCTTCAAACGAAAAACAGGAGGCTGAAGTTGAACATGGAAGAATTAGAAACTCCAGAGTTAAATTGCAAAATGACCCATCTGAAAgaaaagttgacgaaaccagTAAATCAGCAGCAAACAAGTTAATTACGGATTACTTTACAGGCTCTGCTTCCAATAGAAAGAAAGTTTCTGCTACTCCTGGAGGACGGTCTGGAATGAAAAACAGTGGCTCGGGTTCTGTTGACAAATCAAAGGCCAAAAATCCCTCAACAACAAATACTAAAAGAAAGTTACGTGACATACCCTCATGGTGTTGCATACCAGGAACGCCTTTCCGGGTGGATGCTTTCAGATATCTCCGAGGAGATTGTTCCCATTGGTTTCTCACACATTTCCATTTGGACCATTATCAAGGTCTAACCAGGTCCTTCAATCATGGAAAGATCTATTGCTCCTCTGTAACGGCTAGACTTGTGAACATGAACATTGGTATCCCATATGAAAAGTTACATGTTTTACCTCTAAATGAAAGGGTTAACATAGCCGGAATTGACGTGACTTGCTTGGATGCCAACCATTGTCCGGGTTCCATAATCATATTCTTTCAACCTCCCAACGGTAAGGCTGTACTCCATACTGGGGATTTTCGTTTCAGCGAAGAAATAGTATCCAATCCTTTTCTTCAGATATGTCCTATCCACACCCTAATTCTTGATACCACTTACTGTAACCCACAGTATGACTTTCCGAAACAGGAGGCTGTAATACAGTTTGTTATTGATGCCATTCAGGCTGAGGCTTTTAATCCTAAGACCCTTTTTCTGATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTTTTGGAGGTTGCTCGTGTGCTTCGTAAGAAGATTTACGTGACAGCTGCAAAGATGCgtcttttaaaatgtttgggATTCAGGGAGGACGACATGCAGTGGTTTACTTTAAATGAATGTGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTAGCAAGCTTCAAAAGACTGAAGCACATATCAAATCAGTACTTGGGCCGTTTCAGCCTCATAGTTGCTTTCTCTCCCACTGGTTGGACATTtggcaaaggaaaaaagaagtctCCAGGGAGAAGGTGGCAGAAGGGTACCATCATAAGGTACGAAGTGCCTTACAGCGAGCACAGCAGCTTTACAGAGCTGAAGGAGTTTGTAAAACACGTGTCTCCTGAAAACATCATACCGAGCGTGAACAATGATGGCCCAGAATCTGCTAATGCCATGATTTCCCTCTTGTTATCTTG 2291 0.4216 MLGDDDDLQIPLTQTTISPKSISSQEPLKPFNFTHRATKKHKRSSAPIFVGKENVPPPFEGNSSLSKTMHRTTLRSNGMSSYSCVPSLVDSERYRADENCSLDFIPSSIDCGEYKVDTVDLREETVSDGDKVYSSPSDDKKELKIKGGYLRNSIESRLIVSRDSFNAAGDGEFETDSELDLLLNLCSELDESDSSVALASHHQERDTLHSNSVRGLVRCPLCGIDISDLTEEQRYVHTNDCLDKGESRDQEVILPDDAMSPQLLPVPQVVNSSPVIDWLHNLGLGKYEDVFVREEVDWDTLQWLTEEDLSSMGITALGPRKKIVHALCELRKQAAPSNEKQEAEVEHGRIRNSRVKLQNDPSERKVDETSKSAANKLITDYFTGSASNRKKVSATPGGRSGMKNSGSGSVDKSKAKNPSTTNTKRKLRDIPSWCCIPGTPFRVDAFRYLRGDCSHWFLTHFHLDHYQGLTRSFNHGKIYCSSVTARLVNMNIGIPYEKLHVLPLNERVNIAGIDVTCLDANHCPGSIIIFFQPPNGKAVLHTGDFRFSEEIVSNPFLQICPIHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARVLRKKIYVTAAKMRLLKCLGFREDDMQWFTLNECESNIHVAPMWTLASFKRLKHISNQYLGRFSLIVAFSPTGWTFGKGKKKSPGRRWQKGTIIRYEVPYSEHSSFTELKEFVKHVSPENIIPSVNNDGPESANAMISLLLS 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00485 763 Gene3D - 577 724 - -
Bva10g00485 763 SUPERFAMILY SAM/Pointed domain 270 335 IPR013761 -
Bva10g00485 763 ProSiteProfiles SAM domain profile. 270 333 IPR001660 GO:0005515
Bva10g00485 763 SMART SAM_4 267 333 IPR001660 GO:0005515
Bva10g00485 763 MobiDBLite consensus disorder prediction 9 28 - -
Bva10g00485 763 CDD SAM_superfamily 275 327 - -
Bva10g00485 763 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 217 759 - -
Bva10g00485 763 MobiDBLite consensus disorder prediction 1 28 - -
Bva10g00485 763 Gene3D - 268 344 IPR013761 -
Bva10g00485 763 SUPERFAMILY Metallo-hydrolase/oxidoreductase 440 745 IPR036866 -
Bva10g00485 763 MobiDBLite consensus disorder prediction 333 370 - -
Bva10g00485 763 Gene3D - 436 746 IPR036866 -
Bva10g00485 763 MobiDBLite consensus disorder prediction 335 370 - -
Bva10g00485 763 CDD SNM1A-1C-like_MBL-fold 418 574 - -
Bva10g00485 763 Pfam DNA repair metallo-beta-lactamase 647 749 IPR011084 -
Bva10g00485 763 MobiDBLite consensus disorder prediction 388 417 - -
Bva10g00485 763 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 217 759 - -
Bva10g00485 763 Pfam SAM domain (Sterile alpha motif) 273 329 IPR001660 GO:0005515
Bva10g00485 763 MobiDBLite consensus disorder prediction 388 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00485 Bva-Chr10 4791521 4797147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00485 273 327 Glycosyltransferase AT3G07170 49.091 1.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00485 K15340 - gmx:100816321 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00485 10 4791521 4797147 Bva10g00485 10 4791521 4797147 ECH