Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00405 AtgctcttcctttcgactctCAGGAGATCTTCACCATCCATCCACCAATGCATACTCCAACGGCTTTGGATCCGCCAATCTTCAACTGCGCCTTCGTCTTCTTCACCATCGCTGAACAATACCTGGAAATACGATAGTAACCAACGCTTCAATCCAGTTTCTGGGTCCTCTCACAAATGGGTTTCCTCAATTTTCGTCGGCTCGAGTCTAGGGCTTCTATGTTGGTTTTCCATTTCCGAATCCgattttgattcttctttgTTAAAGAGTTCCTCATATTTTACGGACTGGTCAGACGCGAGTTCTGAGACTGCATTCGGCGATGGACGGCGTAGTTCACGATCATTGCTTAGTAAATTATCCTTGccagaaataaatgaaactttcctttttggagATGCTTACAGGAGAaagattttcttcaattatgaGAAGCGCATACGGCTGCGAAGTCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTTGTCGTACGCCAGAAGGAGAACTACTCATGAAACCAGCAGACCTAATGAGAGCAGTTGTTCCGGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTAAGAGGAGAAAGGAGTCCCGGTCATCTACGATGTGCTCCTTCAgaattttttatgctttttgatGTCAACAGCGATGGGcttatatcttttaaagaGTATATCTTTTTTGTAACGCTACTCAGCATACCAGAATCAAGCTTTTCTGTGGCATTTAAAATGTTCGACAGGGACAATAACGGGGAGATAGACAAGGAAGAATTCAAGAAAGTGATGGCATTCATGCGATCTCATAATAGACAAGGTGCTAACCACAGAGATGGACTGCGAACTGGCCTAAAGGTCAATGATTCTGTAGAAAACGGAGGGCTGGTGGAGTACTTCTTTGGTAAAGATGGAAAGGGATGCCTTCAACATGATAAATTTGTAGAGTTTATGAGAGACTTACACAATGAAATTATAAGGCTGGAGTTTGCTCATTATGACTATAAATTACGAGGAACCATATTAGCTAAGGACTTTGCACTCTCCATGGTTGCTTCTGCTGACATGAGTCATCTAGACAGGTTGCTTGATCGGGTGAAAGAATTGGACAATGATCCGTCTTTTAGAGATGCTCGCATCACATTTGAGGAGTTCAAAAGTTTTGCAGAGCTACGAAAAAAACTCTCACCATTTTCTTTGGCCGTTTTCAGTTTTGGAGAAGTAAATGGCCTGTTAACCAAAGATGATTTTCGGCGAGCTACATCACATGTGTGCAGCATACCGCTCTCTGACAAGGTGGTTGACATTGTTTTCCATTTGTTTGACTCAAATCGAGATGGAAATCTAAGTTCAGACGAATTTGTGAGAGCTCTACACAAGCGTGAAAAGGACATAGCTCATCCTTCGGAGGCAGGAATCCTGGGTTTCATGTGTTGCTGCTGGAACTGTGCACATGACTTGTCATCTTCACGGTTGCTTTCCTG 1499 0.4043 MLFLSTLRRSSPSIHQCILQRLWIRQSSTAPSSSSPSLNNTWKYDSNQRFNPVSGSSHKWVSSIFVGSSLGLLCWFSISESDFDSSLLKSSSYFTDWSDASSETAFGDGRRSSRSLLSKLSLPEINETFLFGDAYRRKIFFNYEKRIRLRSPPEKVFEYFASCRTPEGELLMKPADLMRAVVPVFPPSESHLVRDGYLRGERSPGHLRCAPSEFFMLFDVNSDGLISFKEYIFFVTLLSIPESSFSVAFKMFDRDNNGEIDKEEFKKVMAFMRSHNRQGANHRDGLRTGLKVNDSVENGGLVEYFFGKDGKGCLQHDKFVEFMRDLHNEIIRLEFAHYDYKLRGTILAKDFALSMVASADMSHLDRLLDRVKELDNDPSFRDARITFEEFKSFAELRKKLSPFSLAVFSFGEVNGLLTKDDFRRATSHVCSIPLSDKVVDIVFHLFDSNRDGNLSSDEFVRALHKREKDIAHPSEAGILGFMCCCWNCAHDLSSSRLLS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00405 499 SUPERFAMILY EF-hand 213 467 IPR011992 -
Bva10g00405 499 Gene3D - 413 475 - -
Bva10g00405 499 SMART efh_1 210 238 IPR002048 GO:0005509
Bva10g00405 499 SMART efh_1 244 272 IPR002048 GO:0005509
Bva10g00405 499 SMART efh_1 438 466 IPR002048 GO:0005509
Bva10g00405 499 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Bva10g00405 499 CDD EFh 213 270 IPR002048 GO:0005509
Bva10g00405 499 Pfam EF hand 214 231 IPR002048 GO:0005509
Bva10g00405 499 Gene3D - 301 407 - -
Bva10g00405 499 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Bva10g00405 499 SUPERFAMILY EF-hand 309 463 IPR011992 -
Bva10g00405 499 ProSiteProfiles EF-hand calcium-binding domain profile. 240 275 IPR002048 GO:0005509
Bva10g00405 499 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 498 IPR039800 GO:0005509|GO:0006851
Bva10g00405 499 CDD EFh_MICU 245 466 - -
Bva10g00405 499 Pfam EF-hand domain pair 415 464 IPR002048 GO:0005509
Bva10g00405 499 Gene3D - 189 277 - -
Bva10g00405 499 ProSitePatterns EF-hand calcium-binding domain. 253 265 IPR018247 -
Bva10g00405 499 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 498 - -
Bva10g00405 499 Pfam EF hand 248 270 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00405 Bva-Chr10 4376256 4380670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00405 54 428 EF-hand Containing Proteins AT4G32060 67.639 5.61e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00405 K22827 - mnt:21391886 662.529