Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00365 ATGCAATTTCCGACCATCAAAACCAAGTTTTCTCGTACGATTGCTGCCTTGACCCTCGCGGCCTCGCTCAATCTTCCTCCTGACACCACCAAAAGACGAGTGGCGGAACAGAGCTGTTTAGCTCTCCTTCAATCTTGCAACACCTTCGACGAGCTCACCCAAATCCACGCTATCATATACAAATTGGGGCTTAGAAACAACCCATTAGTCCTCACCAAGTTCGCATCCACTTCCTCCGAGCTTGACTCTATTTACTATGCTTCGTCCTTTCTATTTTCCTCCGGTGCCGATACCCGGGTCTATGATGCGTTCCTCTTCAATACCGTCATTAGAGCTTATGCTCAAACGGATAACTCGAAGGAGAAGGCTATAAATATCTACCAAACCATGCTCCGTTATGGAGTTCTGCCAAATAAGTTCACATACCCATTTGTGCTCAAGGCCTGTGCGGGCCTGGCGGATTTAAATTTAGGTAAATCTGTTCATGGTTCGGTGGTAAAGTTTGGGTTTGATGATGATAGTCATGTCCGGAACACTATGATTCATATGTACTGTTGTTGTAACGAAGGGGTTGATTCCGCGAGGAAGATGTTCGACGATACTCCCAAATCAGATTCAGTGACGTGGAGTGCTATGATTGGTGGGTATGCACGTTTGGGTCGTTCTGCAGAAGCCATTGGATTGTTTAGGGAAATGCAGGTTATGGGAGTTGGTCCGGATGAGATCACTATGGTTTCAGTTTTATCTGCGTGCACAGATTTAGGTGCACTTGAGCTGGGCAAGTGGATAGAATCTTATGTCCAACGGGAAAACATTAGAAGACCCGTGGAGCTTTGTAATGCACTTATAGATATGTTTGCAAAATGCGGTGATGTTGACAAAGCGATAAAACTGTTTAGACAAATGGGCGAGCGCACCATAGTTTCCTGGACTTCTGTGATTGTTGGTCTGGCAATGCATGGCCGTGGCTTAGAAGCTATTGCTTTGTTTGATGAGATGATAGAAGCAGGGGTGGCCCCTGATGATGTTGCCTTCATTGGGGTGCTTTCTGCTTGCAGCCACTCTGGGCTAGTGGAAAAAGGGCGTCACtttttcaattcaatgaagaaatttaGCATTGTGCCCAAGATAGAACACTACGGTTGCATGGTTGATCTATTTAGTAGAGCTGGACTTGTCAAAGAAGCTCTGGGTTTTGTTCAAAGAATGCCTATTGAGCCAAACCACATCATATGGAGAAGCATTATCACTGCGTGTCATGCCCGAGGTGAGCTCAAGCTAGGAGAGAGCATCACAAAAGGGCTAATTAGAAATGAGCCTATGTCTGAGTCGAACTATGTATTGCTTTCAAACATTTATGCTAAAATGCTACGTTGGGAAAAGAAAGCCAAGATTAGGGAGATGATGGATATGAAAGGGATGAAAAAGATTCCAGGGAGCACTATGATTGaagtaaataatgaaatgtaTGAGTTTGTGGCTGGAGATAAATCACATAATCAGtacaaagaaatatatgaaatggTGGACGAGATGAGAAGGGAGATGAAGAGGGCCGGATATGTGCCAACGACATCACAGGTGCTGCTTGACATTGACgaagaagacaaagaagaCGCTTTGAATAGACACAGTGAAAAGCTTGCCATAGCTTTTGCTCTTCTGAATACGCCGCCGGGGACAACCATTAGAATTGTGAAGAATTTACGTGTTTGCGAAGATTGTCACTCTGCTACAAAGTTCATTTCCAAGATTTATAAGCGAAAGATTGTGGTGAGGGACCGCAACCGCTTCCACCATTTCAAGAATGGTTTGTGCTCATGTGGAGATTTCTGGTG 1838 0.4331 MQFPTIKTKFSRTIAALTLAASLNLPPDTTKRRVAEQSCLALLQSCNTFDELTQIHAIIYKLGLRNNPLVLTKFASTSSELDSIYYASSFLFSSGADTRVYDAFLFNTVIRAYAQTDNSKEKAINIYQTMLRYGVLPNKFTYPFVLKACAGLADLNLGKSVHGSVVKFGFDDDSHVRNTMIHMYCCCNEGVDSARKMFDDTPKSDSVTWSAMIGGYARLGRSAEAIGLFREMQVMGVGPDEITMVSVLSACTDLGALELGKWIESYVQRENIRRPVELCNALIDMFAKCGDVDKAIKLFRQMGERTIVSWTSVIVGLAMHGRGLEAIALFDEMIEAGVAPDDVAFIGVLSACSHSGLVEKGRHFFNSMKKFSIVPKIEHYGCMVDLFSRAGLVKEALGFVQRMPIEPNHIIWRSIITACHARGELKLGESITKGLIRNEPMSESNYVLLSNIYAKMLRWEKKAKIREMMDMKGMKKIPGSTMIEVNNEMYEFVAGDKSHNQYKEIYEMVDEMRREMKRAGYVPTTSQVLLDIDEEDKEDALNRHSEKLAIAFALLNTPPGTTIRIVKNLRVCEDCHSATKFISKIYKRKIVVRDRNRFHHFKNGLCSCGDFW 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00365 612 Pfam E+ motif 490 516 IPR046849 -
Bva10g00365 612 Pfam E motif 424 484 IPR046848 -
Bva10g00365 612 Pfam DYW family of nucleic acid deaminases 520 612 IPR032867 GO:0008270
Bva10g00365 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 305 IPR002885 -
Bva10g00365 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Bva10g00365 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Bva10g00365 612 Pfam PPR repeat family 306 353 IPR002885 -
Bva10g00365 612 Pfam PPR repeat family 205 251 IPR002885 -
Bva10g00365 612 Pfam PPR repeat family 102 150 IPR002885 -
Bva10g00365 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 137 IPR002885 -
Bva10g00365 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Bva10g00365 612 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 598 - -
Bva10g00365 612 PANTHER - 37 598 - -
Bva10g00365 612 Gene3D Tetratricopeptide repeat domain 157 257 IPR011990 GO:0005515
Bva10g00365 612 Gene3D Tetratricopeptide repeat domain 352 435 IPR011990 GO:0005515
Bva10g00365 612 Gene3D Tetratricopeptide repeat domain 258 351 IPR011990 GO:0005515
Bva10g00365 612 Gene3D Tetratricopeptide repeat domain 27 156 IPR011990 GO:0005515
Bva10g00365 612 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Bva10g00365 612 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Bva10g00365 612 TIGRFAM PPR: pentatricopeptide repeat domain 278 304 IPR002885 -
Bva10g00365 612 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Bva10g00365 612 TIGRFAM PPR: pentatricopeptide repeat domain 347 375 IPR002885 -
Bva10g00365 612 Pfam PPR repeat 279 305 IPR002885 -
Bva10g00365 612 Pfam PPR repeat 379 403 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00365 Bva-Chr10 4185333 4187577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00365 106 612 Glycoside Hydrolase AT3G49170 38.207 6.74e-125 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00365 - - lang:109350726 967.222