Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00344 ATGCCCAAGTTTTCACCCATACTCGATTCCTTTTCACCCTCTAAGCTGTCGCTCGATCGTCGATGGTTACAGTCTGTGGAGATGGGTACTGCTTCTGCTAGATTCCCAATTGGAATCGCTGTCCACTCTCAGGGAAAGCTGGGGGTTTTCCCTTCCAGAGTGGAGTGTTCATGTTCTGAGTTTCCTCTCAATGTGGACGTCTCAAGAATTAGCTTAAGTTCTGCTCCTTCCACTGCTTCAAAGGTTGATCGAATATATGCACGACCTGATATTGATGATTTCTACTGGGATAAAATTCCAACACCGATACTTGATGCAGTAGAAAATCCTCTATGCTTGAAGAACTTGTCTGTTAAGGAACTGAAACAATTAGCTGATGAAATCCGTTTGGAATTGTCTTCCACAATGTCAGATGCACAAATATCTTTCGAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACACCATGTTTTTCATGCCCCGGTGGACAAGATATTGTGGGATGTTGGACATCAAACATATGCACATAAGATTCTTACGGGAAGACGTCACCTCATGAAGACACTGAGACAAAAGAATGGCCTTTCTGGATTTACTTCTCGAGTTGAGAGTGAATACGATGCATTTGGTGCTGGTCATGGGTGTAGCAGCATTTCTGCTGGACTTGGCATGGCAGTTGCGCGAGATATTAAAGGGAGACGGGAACGCATAGTTGCAGTTATCAGCAATTGGACTACTATGACTGGTCAGGTGTACGAGGCAATGAGCAATGCAGGGTATTTGGACTCAAATATGGTGGTGATTTTGAATGATAGTCGTCACTCTTTACTCCCAAAAGTTGAGGAGGGTCCTAAAACATCCGTCAATGCGTTATCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTcagaaaatttagagaaatagCCAAGGGTGTTACTAAAAGAATTGGTAGAGGCATGCATGAACTGGCCGCTAAAGTTGATGAATATGCCCGTGGGATGATAGGTCCTCTTGGTTCCACCCTTTTCGAAGAGCTTGGGTTATACTACATAGGTCCTGTGGATGGACACAACATTGAAGACCTAATTGGTGTTCTACAAGAAGTAGCATCTTTGGATTCTATGGGTCCTGTCCTAGTACATGTGATAACAGATGAAAATCAGGGAGCAGAAAATAATCACAAAAGTGATACAGCAGAGATGCAGCAGGATGGTCCCTGTAACTCTAATTCATTACATTATGATATTCAGCCTCGAACATATAGTGATTGCTTTGTGGAGGCTTTGGTTATGGAGGCagagaaagataaagatattGTGGTGGTTCATGCAGGAACAATGATGGAACCATCACTTAGATTGTTTCAGGAGAAATTTCCAGAAAAATTTTTTGATGTGGGGATGGCTGAACAACATGCAGTCACATTTGCTTCTGGTTTATCATGCGGTGGATTGAAGCCTTTTTGCATAATACCTTCTACCTTTCTCCAAAGAGCTTATGATCAGGTGATCCAAGATGTTGATCAACAGAAAATTCCAGTACGATTTGTGATTACAAGTGCAGGATTAGTGGGTTCTGACGGTCCCTTGCAATGTGGAGCGTTCGATATAACTTACATGTCTTGCTTACCAAACATGACTGTCATGGCACCATCTGATGAGATTGAACTCATGCACATGGTGGCTACTGCTACTCACGTTGATGACCGGCCGATTTGCTTCCGGTATCCAAGGGGTGCCATCATTGGAAAAGACTACACTCTATGCAATGGAGTCCCCATTGAGATTGGAAAAGGAAGAGTTATTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAAAACTGTCTAAAGGCTTATACACTTCTTGCAAAGCTTGGTATTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTGGATATCAAGCTCCTCAGGCAGCTTTGCAAACACCATTCTTTTCTGATTACTGTTGAGGAAGGATCTATTGGAGGATTTGGATCCCATGTTGCTCAGTTTATTGCTCTTGATGGACTGCTCGACGGAAGAATAAAGTGGCGACCAATTGTTTTGCCAGACAGCTACATAGAGCACGCCTCACCAAACGAGCAGCTTGACCAGGCTGGGTTGACCGGACATCGCATTGCTGCTACTGCATTGAGTTTGCTGGGCCGTACCCGTGAAGCCCTCCTTTTTATGTGTTCATG 2234 0.4338 MPKFSPILDSFSPSKLSLDRRWLQSVEMGTASARFPIGIAVHSQGKLGVFPSRVECSCSEFPLNVDVSRISLSSAPSTASKVDRIYARPDIDDFYWDKIPTPILDAVENPLCLKNLSVKELKQLADEIRLELSSTMSDAQISFEASMAVVELTVAIHHVFHAPVDKILWDVGHQTYAHKILTGRRHLMKTLRQKNGLSGFTSRVESEYDAFGAGHGCSSISAGLGMAVARDIKGRRERIVAVISNWTTMTGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKVEEGPKTSVNALSSTLSRLQSSKSFRKFREIAKGVTKRIGRGMHELAAKVDEYARGMIGPLGSTLFEELGLYYIGPVDGHNIEDLIGVLQEVASLDSMGPVLVHVITDENQGAENNHKSDTAEMQQDGPCNSNSLHYDIQPRTYSDCFVEALVMEAEKDKDIVVVHAGTMMEPSLRLFQEKFPEKFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSTFLQRAYDQVIQDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITYMSCLPNMTVMAPSDEIELMHMVATATHVDDRPICFRYPRGAIIGKDYTLCNGVPIEIGKGRVIVEGKDVALLGYGSMVQNCLKAYTLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIEHASPNEQLDQAGLTGHRIAATALSLLGRTREALLFMCS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00344 744 CDD TPP_PYR_DXS_TK_like 429 582 - -
Bva10g00344 744 CDD TPP_DXS 143 393 IPR005477 GO:0008661|GO:0016114
Bva10g00344 744 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 103 733 IPR005477 GO:0008661|GO:0016114
Bva10g00344 744 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 28 743 IPR005477 GO:0008661|GO:0016114
Bva10g00344 744 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 28 743 - -
Bva10g00344 744 SMART Transket_pyr_3 423 588 IPR005475 -
Bva10g00344 744 Pfam Transketolase, C-terminal domain 601 724 IPR033248 -
Bva10g00344 744 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 107 730 IPR005477 GO:0008661|GO:0016114
Bva10g00344 744 Pfam Transketolase, pyrimidine binding domain 424 584 IPR005475 -
Bva10g00344 744 SUPERFAMILY TK C-terminal domain-like 596 732 IPR009014 GO:0003824
Bva10g00344 744 Gene3D - 423 592 - -
Bva10g00344 744 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 422 611 IPR029061 -
Bva10g00344 744 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 104 388 IPR005477 GO:0008661|GO:0016114
Bva10g00344 744 Gene3D - 601 732 IPR009014 GO:0003824
Bva10g00344 744 Gene3D - 96 396 - -
Bva10g00344 744 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 101 484 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00344 Bva-Chr10 4077538 4082287 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00344 K01662 - gmx:100787937 1140.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00344 10 4077538 4082287 Bva10g00344 10 4077538 4082287 ECH