Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00325 ATGCTCTTGTCTGTTGGATTCCTTCTTCTGAGACCAAAGCGTATTCCTTTCGTAGCGTTTCCAATTCAACGTTTCTTCTCGTCTTCCGACAAATCATGGCTAGCTGTGGCGGGTAACACTCTCATCGATTGGCCCTCACCAATCCCAGAACGCATCCCAAACCCAAACACGAACTCGTATCCTAATTCCTCGCGGAATGAGGAATCTAAATTCTCGCAGGATGATTTCTCTACCATTGCCAATCTCTTCACCGACTCTACCATTTCTCCTGGTCCAGACCTCGAGGCTGCACTGGACCGTGCCGGAATCCAACCGAGTTCGACCCTGCTGCAAGCGATATTCGACCATTTTGACTCTTCCCCTAAGTTACTACACTCACTGTTTCTTTGGGCCGAGAAGCAAACTGGGTGCAAACTCTCCACACCGCTCTTCAACTCTATGATAAATGTTCTTGCTAAGTCGAGGGAGTTTGACTCTGCTTGGAATCTGCTCCTTGATCAGATGGATTCAGACCAAGAGGTTTCCTTGGTTTCTATAGATACATTTGCTATTATGATCAGACGGTATGCTCGTGCAGGTATGCCCCAACCTGCTATTCGGACATTTGAATTTGCAAGAAATCTAAAGTCAATCCTCGATTTTGATTCAGAAATGAGTTTGTTTGAGATGTTGTTGGACTCACTTTGTAAAGAAGGGTCTGTTAGGGCTGCTTCAGAGTATTTCcttcagaaaaagaagattgaCCCATGTTGGGTTCCATCAATTCgagtttataatattatgttaaatgGATGGTTTCGATCAAGGAAACTCAAACAAGCTGAGAGATTTTGGGCAGggatgaaaaaggaaaatgtaagACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGAATGCGTCGTATTGAGAAGGCACTTGAATTGGTTGACGATATGACAAACGAAGGAATTAAACCAAATGCAATTGTTTATAATCCAATAATTGATGCATTGGCAGAAGCTGGGAGATTCAAAGAGGCTTTGGGGATGATGGAGCGGTTTCATGTGATGGAAATTGGCCCAACCAACTCAACATACAATTCTCTGGTGAAGGGTTTTTGTAAGGCAGGGGATGTTGCAGGCGCCAGTAAGATCCTTAAGATGATGATAAGTAGGGGTTTCGTTCCTAGCTCTATCACCTATAGCTATTTCTTTAAGTACTTTTCAAGATGTGGAAAAATTGAGGAGGGAATGAACCTGTATACCAAGATGATTGAATCTGGTCATACACCAGATCGACTCACTTACCATCTTCTGGTGAAGATGTTATGTGAGGAGGAGAGATTAGACTTGGCAGTTCAAGTTAGCAAGGAAATGAGATGTAAGGGATATGACATGGACTTGGCTACTAGTACCATGATGGTTCATTTACTCTGCAAAATGCATAGGTTGGATGATGCTTTTACAGAGTTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGCATAGTGAGTTAAAGAGTCGAGGGATGACTGAAATGGCACGGGATTTATGCAATTTGATGTCTTCTGTCCCTCATTCTACAAAGTTACCCAACACGTATATTGAAGATGTAGATGATGCACGCATGCGGAGAAAATCTATAATGCAGAAAGCCAAAACCTTTTCTGATATGCTGAAGAACTGTGAGGACCCCAGAGAACTTGTTAAGCATAGAAGTTCATCAGAAACTACTGTCTCAAGTGCAAATTGTTTGATAGAGAGCATTAAGAAAAAGACCAATGAGACATG 1805 0.4144 MLLSVGFLLLRPKRIPFVAFPIQRFFSSSDKSWLAVAGNTLIDWPSPIPERIPNPNTNSYPNSSRNEESKFSQDDFSTIANLFTDSTISPGPDLEAALDRAGIQPSSTLLQAIFDHFDSSPKLLHSLFLWAEKQTGCKLSTPLFNSMINVLAKSREFDSAWNLLLDQMDSDQEVSLVSIDTFAIMIRRYARAGMPQPAIRTFEFARNLKSILDFDSEMSLFEMLLDSLCKEGSVRAASEYFLQKKKIDPCWVPSIRVYNIMLNGWFRSRKLKQAERFWAGMKKENVRPSVVTYGTLVEGYCRMRRIEKALELVDDMTNEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVMEIGPTNSTYNSLVKGFCKAGDVAGASKILKMMISRGFVPSSITYSYFFKYFSRCGKIEEGMNLYTKMIESGHTPDRLTYHLLVKMLCEEERLDLAVQVSKEMRCKGYDMDLATSTMMVHLLCKMHRLDDAFTEFEDMIRRGIVPQYLTFQRMHSELKSRGMTEMARDLCNLMSSVPHSTKLPNTYIEDVDDARMRRKSIMQKAKTFSDMLKNCEDPRELVKHRSSSETTVSSANCLIESIKKKTNET 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00325 601 Gene3D Tetratricopeptide repeat domain 354 455 IPR011990 GO:0005515
Bva10g00325 601 Gene3D Tetratricopeptide repeat domain 249 353 IPR011990 GO:0005515
Bva10g00325 601 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 88 598 - -
Bva10g00325 601 Pfam PPR repeat family 359 405 IPR002885 -
Bva10g00325 601 Pfam PPR repeat family 253 302 IPR002885 -
Bva10g00325 601 SUPERFAMILY HCP-like 233 436 - -
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Bva10g00325 601 Gene3D Tetratricopeptide repeat domain 456 530 IPR011990 GO:0005515
Bva10g00325 601 PANTHER LEAF PROTEIN-LIKE 88 598 - -
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 291 325 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 362 394 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 469 498 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 144 170 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Bva10g00325 601 TIGRFAM PPR: pentatricopeptide repeat domain 257 289 IPR002885 -
Bva10g00325 601 Gene3D Tetratricopeptide repeat domain 109 248 IPR011990 GO:0005515
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Bva10g00325 601 Pfam PPR repeat 144 164 IPR002885 -
Bva10g00325 601 Pfam PPR repeat 467 496 IPR002885 -
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Bva10g00325 601 MobiDBLite consensus disorder prediction 55 69 - -
Bva10g00325 601 Pfam PPR repeat 320 349 IPR002885 -
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Bva10g00325 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Bva10g00325 601 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00325 Bva-Chr10 3983992 3987067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00325 216 574 Miscellaneous Gene Families AT4G11690 24.731 8.87e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00325 - - pper:18792309 810.061