Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00320 ATGTCCAACAATATGGTTTCACAACAACTACCAATACCAAACATGCAGATAAGTCAGATGGAGCCCATGGTAAACAAAGTCGATTCATCAGAGAAAGACTTGCAAATGGGACTCTTGGGGCCTGTTTGCAGTGATCCTATGTCACAGCAACAGCCAATATCAAATGATCAGGTTGGATTGTTGAGAGCAACGCCTGATAATCCTGGTTCTCAGGGGCTGTCAATGTCAATTATGCGGAGTGGACAAGTAGAATCTCGCTCAAGTAATTTGAGCGTGCATCAGCTTTTAATGCCCAACAGACAAACCATGCAAATGGGGTCAATGATTAACAGTATGGGGCATCAACGGGTATCAATGACACACAAGCGGAAGGCACCAGTGGAAATGTTTTCCAATAGTTACATGACCGCTAACAAGCGGGTTGCACAAATGGAACATAGGCCATGGTTGCAGCAAGTTTCTGCATCAAATAAAGGTGCTCCGTCAATACAACCCTTGTCAAGTGCTCCCAGACCGCAGCACTTACCAGCATCCAGTAAGAGAAAAACGCAGATGGAGCCCACATCCAGTAAATCTGGGACTCCTCGTTCCATGAATTCTAAAAGTCAGAATACGAAGGTGCAACAGTTTTCTAAGGTTCAATCTGAGTCATCTGAATCTGTTAGGTCCAAGATGAGGGAGTCATTAGCTGCCGCACTGGCCTTGGTTTCTCAGCAAGATAAATCTCAGGCTGGAAACAGTAGTACATTGAATGAAGTTGCTAGTTCTCAGGTTAAGGTAGAGAACAGTTCTCAATGTGCTGGGTCAGCATCTACTGCCACAGATGCTTCTCAGTGGCCAAAGCAGGAGACTTTTCGATCTGGTGATTCTTCTTCAGGTACAACTGCTTCAGTTGACCATGTAATTGGGGAGCATAGAATTGTCTCAACCTCTAATGAAGATTTTTCTTCTGCAAAATTGAAGGACAATGAAGCTGAAACCAGAAACAtttcaaataatgaaatgataCTACATACTATGGAAGTCTCGAATTGTGATACACAAGAATTCAACACAAGTTACACTTTGACCACTGATGATGTTCCTTTTAGTGATAACTTCTTTGTCAAAGATGAACTTTTGCAGGGAAATGGTCTTTCCTGGGTAATGGAATCAGAGATGGGAATGACGGACCAAAAGGAAAGTCATACTAATGAACAGCAGAGGCTGGAACCCTACGAAGTAGGTGGTGGGAAGGAACATGCAGTTCATTCACCTGAACTTCTGGCATCAAGGATAGAGGAAGAACTTTTCAAACTATTTGGAGGTGTGAATAAGAAGTACAAGGAGAAGGGGAGGTCTCTGTTATTCAATTTGAAGGATCGTAATAATCCTGAACTGAGAGAAAGGGTTATGTCTGGTGAAATTCCCCCTGAAAGACTATGTTCAATGACTGCAGAGGAACTTGCTTCAGAGGAGCTTTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTGCCTGATGATGCTGATCTTAGACGTTTGGtcaagaaaacacataaaggTGAGGTTCAAGTGGAAGTTGAACATGATGATAATGTTTCAATGGTGGTTTCTGGTGGCACAACCTCTGTTGCTCAAAATCAGACAGAAGAAAAGGATGTGGAAGCCCCTAGGCCTTCTAAAACTGACGGGATTAAAGGTGGTATGAACTCAGCTAGTGAGAAGAGTAGTTCAGGCAAAGATAATACAGTTCGTCTAACCATTCCTTCCAATGATGGGACTGATCCAATGCAAGGGCTTATGGCAGATGATGCATTGAAGGATGCAGATTTTCTCCCCCCAATTGTCTCCCTTGATGAGTTCATGGAATCACTTCATTCAGAGCCaccatttgaaaatttacCAGTGGAATCAGGAAAAACTGCACCTATCTCGGACAAGGATGATACTGATGGTGGTTCTGAATTGAAGACTTCCAATTTAACTCCAAGTGAGCTTGATGATGACACTGATAAGTCTGAGAAAATACATCAAGAAACATGTCCAAATGTAGAGGCTTACGTTAAAAAGGAGGTCAATGCAGAGCGTGGGGCTGTTATTTCTGATAATCTTTCTGATACAAAGTTAACCGATGATCATTCTGATTCGAAGCCTGCTAATGTAAATGTGGAGGTAAGGTTAACTGATGACACAAAGTCTGCTTCAAGTCGTGCTGAGTTGGAAGTTAGTCAGGGTCGTGCAGGAGAGAGAAATAGTTATAGCCATTCTTATTCCTATACTACAGTTGCCGCTGGTATCTCCAAGGGTGAATCCATTTGGGAGGGCACGCTTCAACTGAATATCTCGGTTACTCAACCAGTTATAGGTATCTTTAAAAGCGGTGAGAAAACTTCTGTGAAAGACTGGCCTGGATTTCTTGAGATCAAGGGGAGAGTCAGACTCGATGCATTTGAGAAGTTCCTGCAAGAGCTACCAATGTCCAGGAGTCGGGCTATCATGGTTGTGCATTTTGTTTCTAAGGAGTCGCCCCCCAAGAATGAGCAATCAACCCTCCAAGAGGCGGCAGATTCATACATTGTGGACGAGAGAGTGGGTTTTGCTGAACCTGTGCCTCGAGTTGAGCTTTATTTTTGCCCACCTCATAAAAAAACAGTTGATATGCTCAGCAAAGTACTTACAAAGGAACAAATAGAGGCATTTAATGCTATTGATAATGGTCTAATTGGTGTTCTTGTATGGAGAAAGACTCATTTAACTTCAAGTGTGTCGCCCACATCATCATCACACCACAAACATAGCTCTAAAAAGCAATACTTCTCATCTAGGAGACAGCAAGATACAAATATGAATGCCAATCCCTCACCCAAACAAAGCCTCCCAAAGGGCATGACAATTACCGAGGCTGGACCTCCatctgatgatgatgatgatgttcCTCCTGGTTTTGGGCCAGCAGTGGCCAGAGATGAGGATGACCTCCCGGAGTTCAATTTCTCCGGTGGTGTCAATCCGGTGCCACGAGTGGCCCAAAAGCCTATGGGACCACCAGGTGTGGTCCCATTCCATTCGGTTAATCAAACCACTTCGCGTCCTGTACAGCAAATGAGAGAGCTTGTACAAAAATATgggcaaaacaaaacaattgtACCTTGTTCAGGTAACTGGCAGGATAAATTTGGCGCGACAATTCAGCCATGGAATGACGACGACGACGATATACCTGAATGGCAACCTCAAACACTCCAGAACCAGTTTCCTCCCCAACAACAGCATGATAGCAGCTATCAGCTTCGACCGCACTTGTTGAATCAACCGTATGCGGTTTCTTCCCATCAGCCAATGATGCAATCTCGACAACACGTAATGAATGCGACGCAACCAAATGTTGTTCCTCAGTGGGTTCCTACTGCCCAAGGAAATAACTTACAGCCTAGTAATTTTAATGGCCAAGCCATTGCTGGACAGCCATATGGGGCGCCAGTACAAGGTGTTGCTTGGCGTCAAAATATTCCTAGAAGTAGGGGTTTCTA 3527 0.4307 MSNNMVSQQLPIPNMQISQMEPMVNKVDSSEKDLQMGLLGPVCSDPMSQQQPISNDQVGLLRATPDNPGSQGLSMSIMRSGQVESRSSNLSVHQLLMPNRQTMQMGSMINSMGHQRVSMTHKRKAPVEMFSNSYMTANKRVAQMEHRPWLQQVSASNKGAPSIQPLSSAPRPQHLPASSKRKTQMEPTSSKSGTPRSMNSKSQNTKVQQFSKVQSESSESVRSKMRESLAAALALVSQQDKSQAGNSSTLNEVASSQVKVENSSQCAGSASTATDASQWPKQETFRSGDSSSGTTASVDHVIGEHRIVSTSNEDFSSAKLKDNEAETRNISNNEMILHTMEVSNCDTQEFNTSYTLTTDDVPFSDNFFVKDELLQGNGLSWVMESEMGMTDQKESHTNEQQRLEPYEVGGGKEHAVHSPELLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEIPPERLCSMTAEELASEELSQWRIAKAEELAQMVVLPDDADLRRLVKKTHKGEVQVEVEHDDNVSMVVSGGTTSVAQNQTEEKDVEAPRPSKTDGIKGGMNSASEKSSSGKDNTVRLTIPSNDGTDPMQGLMADDALKDADFLPPIVSLDEFMESLHSEPPFENLPVESGKTAPISDKDDTDGGSELKTSNLTPSELDDDTDKSEKIHQETCPNVEAYVKKEVNAERGAVISDNLSDTKLTDDHSDSKPANVNVEVRLTDDTKSASSRAELEVSQGRAGERNSYSHSYSYTTVAAGISKGESIWEGTLQLNISVTQPVIGIFKSGEKTSVKDWPGFLEIKGRVRLDAFEKFLQELPMSRSRAIMVVHFVSKESPPKNEQSTLQEAADSYIVDERVGFAEPVPRVELYFCPPHKKTVDMLSKVLTKEQIEAFNAIDNGLIGVLVWRKTHLTSSVSPTSSSHHKHSSKKQYFSSRRQQDTNMNANPSPKQSLPKGMTITEAGPPSDDDDDVPPGFGPAVARDEDDLPEFNFSGGVNPVPRVAQKPMGPPGVVPFHSVNQTTSRPVQQMRELVQKYGQNKTIVPCSGNWQDKFGATIQPWNDDDDDIPEWQPQTLQNQFPPQQQHDSSYQLRPHLLNQPYAVSSHQPMMQSRQHVMNATQPNVVPQWVPTAQGNNLQPSNFNGQAIAGQPYGAPVQGVAWRQNIPRSRGF 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00320 1175 Gene3D - 393 485 IPR036575 GO:0006351
Bva10g00320 1175 SMART mid_6 394 493 IPR003618 GO:0006351
Bva10g00320 1175 MobiDBLite consensus disorder prediction 661 678 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 153 224 - -
Bva10g00320 1175 Pfam SPOC domain 766 912 IPR012921 -
Bva10g00320 1175 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 76 1159 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 1067 1091 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 541 599 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 727 750 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 261 296 - -
Bva10g00320 1175 ProSiteProfiles TFIIS central domain profile. 401 510 IPR003618 GO:0006351
Bva10g00320 1175 MobiDBLite consensus disorder prediction 939 960 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 1075 1091 - -
Bva10g00320 1175 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 76 1159 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 565 593 - -
Bva10g00320 1175 MobiDBLite consensus disorder prediction 153 218 - -
Bva10g00320 1175 Pfam Transcription factor S-II (TFIIS), central domain 401 498 IPR003618 GO:0006351
Bva10g00320 1175 MobiDBLite consensus disorder prediction 919 996 - -
Bva10g00320 1175 SUPERFAMILY Elongation factor TFIIS domain 2 413 486 IPR036575 GO:0006351
Bva10g00320 1175 MobiDBLite consensus disorder prediction 627 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00320 Bva-Chr10 3955064 3961096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00320 - - gmx:100808809 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00320 10 3955064 3961096 Bva10g00320 10 3955064 3961096 ECH