Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00303 ATGTCTTCCGAATCTCAAGAGCCCTCTTCATTACCATCGCCGGCGGAGCAGGAAGATGAATCCAAATCTATAAGCAAGAAAGCAGCTAAAAAGGAAGCGGCAAAGCTAGAAAAGCTCCGCCGCCGCCAAGAAGCCAGCTTAGTCGCCGGCGCCACATCTCTCTCCGTTGAGGAAGACCCTCTTTCTTCCAACTATGGCGACGTACCGCTCTTGGAGCTCCAGTCGAAGACAGTCGCCAATATCGGCGACTGGACCAAAATCGAAGCTCTTACCAATTCCTTGGAGAATCAATCGGTTCTTATAAGAGGGAGAGCGCAGGCGATCCGCGCTGTGGGGAAGAAAATGGCGTTCTTGGTTTTGAGGGAGAATGGGTTCACTGTGCAGTGCGTGGTACAGGTGCAGCCTAATATTGTGAGCCCTCAGATGGTGAAGTTTGCCACTGCATTGAGTCGGGAGTCCATTGTCGATATCGAAGGGGTAGTCTCAGTGCCCAATACTGCTATTAAAGGCGCTACACAGCAGGTGGAAGTTCAAGTGAGGAAATTATATTGTGTTAGCAGGGCTGTCCCAACTCTACCCATTAATATTGAGGATGCTGCTAGAAGTGAAATAGAAATTGAGAAAGCTATTCAGGCCGGTGAACAACTTGTTCGTGTTAATCAGGATACACGTCTAAATTTTAGAGTCCTTGATCTGCGAACACCAGCTAATCAAGGAATTTTCCGCATTCAATCTCAAGTTGGAAATGCATTCAGACAATTCTTATTATCTGAAGGCTTTGTTGAAATCCACACTCCAAAGTTAATTGCTGGATCTAGTGAAGGTGGAGCAGCTGTTTTTAAACTAGACTACAAAGGGCAACCTGCTTGCTTGGCCCAGTCACCTCAGCTTCACAAGCAAATGTCAATTTGTGGTGACTTTGGCCGTGTTTTTGAGATTGGCGCTGTTTTTAGAGCAGAAGACTCCTACACCCACAGACATCTGTGTGAATTTACCGGTCTTGATGTTGAAATGGAGATTAAGAAGCATTATTCTGAGGTTATGGACAtagttgataaattatttgtagCAATGTTTGACAGTTTGAACCAGAATTGTAAGAAGGATCTGGAAGCTGTTGGAAGGCAGTACCCATTTGAACCTTTAAAGTATCTGCGACAGACTCTGCGGCTTACATATGAAGAAGGGGTTCAGATGCTCAAGGATGCTGGTACAGAAATTGAACCTTTTGGCGACTTGAATACTGAAGCAGAAAGGAAATTGGGCCAGCTAGTTTTACAGAAGTATGGTACAGAATTCTACATCCTTCACCGTTACCCGTTGGCTGTAAGGCCTTTTTACACGATGCCTTGCTATGACAATCAGGAATACAGCAACTCATTTGATGTCTTTATACGAGGTGAGGAGATAATTTCAGGAGCACAGCGTATCCATGTTCCAGAATTCTTGGAAGAACGTGCGGTGGCTAAGGGAATTGACACGAAAACAATATCTGCATACATCGATTCTTTCAGATATGGTGCACCCCCACATGGAGGCTTTGGTGTTGGCTTGGAGCGCGTAGTAATGCTATTCTGTGGCCTGAATAACATCCGCAAAACATCACTTTATCCACGTGACCCACTTAGGATTGCACCGTG 1640 0.4506 MSSESQEPSSLPSPAEQEDESKSISKKAAKKEAAKLEKLRRRQEASLVAGATSLSVEEDPLSSNYGDVPLLELQSKTVANIGDWTKIEALTNSLENQSVLIRGRAQAIRAVGKKMAFLVLRENGFTVQCVVQVQPNIVSPQMVKFATALSRESIVDIEGVVSVPNTAIKGATQQVEVQVRKLYCVSRAVPTLPINIEDAARSEIEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQVGNAFRQFLLSEGFVEIHTPKLIAGSSEGGAAVFKLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGAVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDKLFVAMFDSLNQNCKKDLEAVGRQYPFEPLKYLRQTLRLTYEEGVQMLKDAGTEIEPFGDLNTEAERKLGQLVLQKYGTEFYILHRYPLAVRPFYTMPCYDNQEYSNSFDVFIRGEEIISGAQRIHVPEFLEERAVAKGIDTKTISAYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00303 546 Gene3D Bira Bifunctional Protein; Domain 2 193 546 IPR045864 -
Bva10g00303 546 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 16 546 - -
Bva10g00303 546 CDD AspRS_cyto_N 99 198 - -
Bva10g00303 546 Gene3D - 57 191 IPR012340 -
Bva10g00303 546 CDD AsxRS_core 218 541 - -
Bva10g00303 546 MobiDBLite consensus disorder prediction 1 43 - -
Bva10g00303 546 TIGRFAM aspS_nondisc: aspartate--tRNA(Asn) ligase 90 546 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Bva10g00303 546 MobiDBLite consensus disorder prediction 1 18 - -
Bva10g00303 546 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 241 538 IPR006195 -
Bva10g00303 546 PANTHER ASPARTYL-TRNA SYNTHETASE 16 546 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Bva10g00303 546 Pfam OB-fold nucleic acid binding domain 99 182 IPR004365 GO:0003676
Bva10g00303 546 MobiDBLite consensus disorder prediction 19 43 - -
Bva10g00303 546 Pfam tRNA synthetases class II (D, K and N) 221 540 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00303 546 Coils Coil 26 46 - -
Bva10g00303 546 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 82 546 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Bva10g00303 546 PRINTS Aspartyl-tRNA synthetase signature 291 303 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00303 546 PRINTS Aspartyl-tRNA synthetase signature 501 515 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00303 546 PRINTS Aspartyl-tRNA synthetase signature 308 321 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00303 546 PRINTS Aspartyl-tRNA synthetase signature 461 477 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00303 546 SUPERFAMILY Class II aaRS and biotin synthetases 216 543 IPR045864 -
Bva10g00303 546 SUPERFAMILY Nucleic acid-binding proteins 63 191 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00303 Bva-Chr10 3822682 3826987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00303 K22503 - gmx:100788164 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00303 10 3822682 3826987 Bva10g00303 10 3822682 3826987 ECH