Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00274 ATGCGTCACACTCACATCTTATATCTCTCTCAATCCCTGCACTCAAATCCAGTTAAGTCTTTCTACATTCCTTCTTATTCTTCTATTTCTGCTTCAACTTGGCGTCGTCGTTTGGTGAGAAACGCCACTCCTGCTACAAAGAATCTCAAGCATCTCACTTCCCGCATCGTCGAACTCACCCGACGGAGACAGCTTCACCagatttttggTGAGATTGAAGTTGCCAAGAGACGTTATGGGGAGCTGAACACTATTGTCATGAACGCGGTCATGGAGGCATGTGTTCATTGCGGGGATATAGATTCAGCTCTTAGGATATTTGATGATATGACAAAACCGAAGAGTTGTGGTGTTGACACGGTAACCTATGCCACGCTTTTGAAGGGTTTAGGTAAGGCTCGGAAATTTGATGAAGCATTTCAATTGCTTGAATCTGTGGAAAAAGATGCTGCCAATGGAAGTCCGAAGTTGTCGCCACCGCTTATATATGCTCTGCTGAATGCCTTAATTGAAGCAGGAGACTTACTTCGTGCAAATGGCCTCCTTGCACGTTATGGTTTTGTGCTTCATCAGGATGGCAATGTTTCACTCTCAGATTACAACTTACTAATGAAGGGGTATATAAACACAGGATCTCCTCAAGCTGCAATAAACCTGCACAATGAAATATTGAATCAAGGAATGAAGCCTGACAGGCTCACCTATAACACACTGCTTTTAGCATGTGTCAAGAGTAATGAGTTGGATGCTGCACTgcaattttttgaagaaatgaaGAATGAAGCACAAAAATTGGCCCTTGATGATCTCTTTCCAGATATTGTCACATATACAACATTGCTCAAGGGTTTCGGGGATGCCAAGGATCTCTCTTCAGTTCTGAAGACAGTGCTGGAAATGAAATCATGTCATGGGTTGTATATTGACCGAACAGCTTACACTGCTATAGCTGATGCTTTACTAAACTGTGGCTCAATTAAGGGTGCTCTATGTATTTTTGGAGAAATACTGAAGCGGGCTGGTTGGAATCCAGACTTGAGGCCAAAGCCTCACCTCTATCTTTCTATGATGCGTGCTTTTGCCTTTGGAGGAGATTATGATATGGTTAAAAATTTGCATAAGCGAATGTGGCCAGATTCTGTAGGAACTATCTTACCGGTTGCCCAAGAAGAAGCTGATCATCTTCTCATGGAAGCAGCACTAAATGCTGGTCAGGTTGACGTGGCTATTGAAACtctaattaatattacttCCAGATGGAAGCATATATCTTGGACAAGTCGTGGAGGCGTGGTTGCTTTGCGTATTGAGGCCATATTGGGATTTTCAAAATCCATAGTCGCACCTTACTTAATTCCTCAGGTTTCCCCCGCTGAAGCTATCGAGAGTATAATGATGCCTTTTGAGACAACCCGACCACTACAAGGCACTGTGGAGTTGAAGAAAGTGGTTATGCGTTTCTTCACTGATGCAGTTGTGCCTATCGTAGACGATTGGGGCAGTTGTACGGGACTGTTGCACCGTGAGGATTGCACTCAGTTGAACGCCCCAGTTTCAACAATGATGAGAAGCCCAGTTCCCACTGTTACAACCACAACATCTGTGGGTCATGTGGTTGATTTAATCCTGGATAAAGGGTATCCAATGGTTATCGTTGTAAAGTACAGCAATTCGTATGGGTATAGCACTTCTTCATACAGCTCAAGGGCAGTTGGAGTTTTTACGGCGCAACAATTGTGTAGGCTTATCAAACCTGTGTCTGAATTGCTAGGGCCACAACTTTCAATCTTCACCAGATA 1799 0.4286 MRHTHILYLSQSLHSNPVKSFYIPSYSSISASTWRRRLVRNATPATKNLKHLTSRIVELTRRRQLHQIFGEIEVAKRRYGELNTIVMNAVMEACVHCGDIDSALRIFDDMTKPKSCGVDTVTYATLLKGLGKARKFDEAFQLLESVEKDAANGSPKLSPPLIYALLNALIEAGDLLRANGLLARYGFVLHQDGNVSLSDYNLLMKGYINTGSPQAAINLHNEILNQGMKPDRLTYNTLLLACVKSNELDAALQFFEEMKNEAQKLALDDLFPDIVTYTTLLKGFGDAKDLSSVLKTVLEMKSCHGLYIDRTAYTAIADALLNCGSIKGALCIFGEILKRAGWNPDLRPKPHLYLSMMRAFAFGGDYDMVKNLHKRMWPDSVGTILPVAQEEADHLLMEAALNAGQVDVAIETLINITSRWKHISWTSRGGVVALRIEAILGFSKSIVAPYLIPQVSPAEAIESIMMPFETTRPLQGTVELKKVVMRFFTDAVVPIVDDWGSCTGLLHREDCTQLNAPVSTMMRSPVPTVTTTTSVGHVVDLILDKGYPMVIVVKYSNSYGYSTSSYSSRAVGVFTAQQLCRLIKPVSELLGPQLSIFTR 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00274 599 TIGRFAM PPR: pentatricopeptide repeat domain 200 231 IPR002885 -
Bva10g00274 599 TIGRFAM PPR: pentatricopeptide repeat domain 234 260 IPR002885 -
Bva10g00274 599 TIGRFAM PPR: pentatricopeptide repeat domain 121 146 IPR002885 -
Bva10g00274 599 TIGRFAM PPR: pentatricopeptide repeat domain 87 111 IPR002885 -
Bva10g00274 599 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Bva10g00274 599 Pfam PPR repeat family 83 131 IPR002885 -
Bva10g00274 599 Pfam PPR repeat family 200 243 IPR002885 -
Bva10g00274 599 ProSiteProfiles CBS domain profile. 521 593 IPR000644 -
Bva10g00274 599 Pfam PPR repeat 353 376 IPR002885 -
Bva10g00274 599 SUPERFAMILY CBS-domain pair 462 560 IPR046342 -
Bva10g00274 599 PANTHER OS09G0431600 PROTEIN 27 589 IPR044781 -
Bva10g00274 599 Pfam Pentatricopeptide repeat domain 265 302 IPR002885 -
Bva10g00274 599 Gene3D Tetratricopeptide repeat domain 264 435 IPR011990 GO:0005515
Bva10g00274 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 149 IPR002885 -
Bva10g00274 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Bva10g00274 599 Gene3D - 484 591 IPR046342 -
Bva10g00274 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Bva10g00274 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 113 IPR002885 -
Bva10g00274 599 Gene3D Tetratricopeptide repeat domain 161 263 IPR011990 GO:0005515
Bva10g00274 599 Gene3D Tetratricopeptide repeat domain 34 151 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00274 Bva-Chr10 3679513 3687572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00274 22 376 Miscellaneous Gene Families AT4G11690 22.039 1.00e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00274 - - gmx:100813146 793.882