Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00265 ATGTCGACAGAAGCCGCACCATatgaaccaaaaaatattCTGCTAACTGGCGCAGCTGGTTTCATTGCCTCCCATGTCACCACCAGGCTAATCAAAAACTACCCTCAATACAAGATCGTAGCTCTTGATAAGCTAGATTATTGCTCTACTATCAAGAATTTGGAATCATGTTCTTCATCCccaaacttcaaatttattaagggTGACATTGCTAGCGTTGATATTGTGAATCACCTTATGATAGAAGAGGATATAGACACCATTATGCACTTTGCTGCTCAAACCCATGTAGATAATTCTTTTGGTAACTCCATGGAATTCACCTACAATAACATATATGGCACCCATGTAATCCTTGAAGCCTGCAGGGTCACCAACTGCGTAAAAAGGTTCATCCATGTTAGCACTGATGAAGTTTATGGTGAGACTGACTTAGAAACTGATGTGGGCAATCATGAGACATCTCAGCTTCTTCCCACCAATCCTTATTCTGCAACAAAAGCAGGAGCAGAAATGCTGGTCATGGCTTATCACAGATCTTATGGCCTTCCAATCATCACTACTCGAGGCAACAATGTCTATGGTCCAAACCAATACCCCGAAAAGCTTATCCcaaaattcattcttttggCCATGAGAGGTGAGAAGTTGCCAATCCATGGAAATGGCTCAAATGTGAGGAGCTATCTGTATTGTGCAGATGTTGCAGAAGCATTTGATGTCATACTTCATAAAGGAGCGGTTGGCCATGTCTACAATATTGGCACTAAGAAGGAGAGGAGTGTACAAGATGTGGCACAAGATATTTGCAAGCTCTTCAAATTGGATCCTAAACAAGTTATTGAGTTTGTTCAAGATAGACCCTTCAATGACAAGAGGTATTTTCTGGATGATCAAAAGCTGAAGAAACTTGGTTGGAAGGAGAGCACTCCTTGGGAAGAAGGACTTAAGATGACAATTGATTGGTATAAGAAAAACCCAGATTGGTGGGGTGATGTCTCCACTGCTTTACACCCACATCCACGTTTCTCACCCATGAACCTCTCTGATGAAGCTGCATGGAGTTTTCAGCATGGGCATTCAAAATTGGCAAGGTCATTTACTGATGTTCATCGCAGTTCAGGAGGACTGAAATTCTTGATTTATGGCAAAACTGGTTGGATAGGAGGGTTGTTAGGGAAGCTTTGCGATGAAGAGAAAATAGCTTGGGAGTATGGGAAAGGAAGACTTGAAGACAGGAAATCACTGTTGGCTGATATAAGCAGAATTAAGCCAACTCATGTGTTAAATGCAGCTGGTATTACCGGAAGGCCAAATGTTGATTGGTGTGAATCACACAAAGTTGAAACAATTAGGACTAATGTAGTCGGGACACTAACTCTGGCTGATGTTTGCAAGGAACAAGGGATTCATATGACAAATTTTGCAACTGGTTGCATATTTGAGTATGACAAAGATCATCCTCCTAATTCTGGCATTGGTTTCAAAGAAGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCAAAGACCAAGGCCAtgGTGGAGGAACTTttgaaagaatatgaaaatgtcTGCACACTGAGAGTTAGAATGCCAATATCATCAGATCTCAACAACCCAAGAAACTTTATCACAAAGATTTCTCGTTATAACAAGGTGGTTAACATACCAAATAGCATGACAGTGCTAGATGAGCTCCTACCCATATCCATTCTGATGGCTAAGAAAAAGTTAACAGGGATGTGGAACTTCACCAACCCAGGTGTCATAAGCCACAATGAGATTTTAGAATTGTACAGGGATTACATTGACCCGAAATTCAAATGGGAAAACTTTAATTTGGAAGAACAGGCAAAGGTAATAGTTGCTCCCAGGAGTAACAATGAAATGGATGCATCCAAGCTCAAAAAGGAGTTTCGAGGTTTGTTGCCCATCAGAGATTCCATCATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTG 1985 0.397 MSTEAAPYEPKNILLTGAAGFIASHVTTRLIKNYPQYKIVALDKLDYCSTIKNLESCSSSPNFKFIKGDIASVDIVNHLMIEEDIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVILEACRVTNCVKRFIHVSTDEVYGETDLETDVGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITTRGNNVYGPNQYPEKLIPKFILLAMRGEKLPIHGNGSNVRSYLYCADVAEAFDVILHKGAVGHVYNIGTKKERSVQDVAQDICKLFKLDPKQVIEFVQDRPFNDKRYFLDDQKLKKLGWKESTPWEEGLKMTIDWYKKNPDWWGDVSTALHPHPRFSPMNLSDEAAWSFQHGHSKLARSFTDVHRSSGGLKFLIYGKTGWIGGLLGKLCDEEKIAWEYGKGRLEDRKSLLADISRIKPTHVLNAAGITGRPNVDWCESHKVETIRTNVVGTLTLADVCKEQGIHMTNFATGCIFEYDKDHPPNSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYENVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISILMAKKKLTGMWNFTNPGVISHNEILELYRDYIDPKFKWENFNLEEQAKVIVAPRSNNEMDASKLKKEFRGLLPIRDSIIKFVFEPNKKT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00265 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Bva10g00265 661 Gene3D - 204 326 - -
Bva10g00265 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Bva10g00265 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Bva10g00265 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 376 654 IPR036291 -
Bva10g00265 661 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 1 659 - -
Bva10g00265 661 Pfam RmlD substrate binding domain 378 548 IPR029903 -
Bva10g00265 661 Gene3D - 370 661 - -
Bva10g00265 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 336 IPR036291 -
Bva10g00265 661 Gene3D - 13 317 - -
Bva10g00265 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00265 Bva-Chr10 3651067 3654291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00265 12 323 Miscellaneous Gene Families AT1G02000 25.970 1.97e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00265 K12450 - gmx:100776241 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00265 10 3651067 3654291 Bva10g00265 10 3651067 3654291 ECH