Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00259 ATGACGATGATTCACTTGCAGAGGAGCTTGTTGTCCACCACGACGGCCTCTGCTACTTCCTTCACTTTCTCAAGCCCTACTTCAGCTCTTCATCTCCGCCACTTcatgTTGCAGTTCAGAGCGATTCGAAGTTCCCCAAATACTAATCTATCACATTCCACGTTAGGCCTTGGCAGCTGTATTAAATGCCAAAAGTTCTCCCAAATTAAGTTTGGAGGGCTCAGGGTATCTCGGACGATCTCAACCAACCATATAACTATTAGTCAAAGTTTTCATCCTTTAAGTAACATTGACGATGGTTCTAGGTGTGCTGTTGTTCTTCCAGCATTAGCAAGATGTAAATTTATGTCGTCTCTGAACAATTTCACTTCTCCATCTATGGCTAAGGGCATTAGCCGCTGTTGGACAATTGATGGGATTTTTCCCAGGAGATTTTTTTCTCACAGCCGGAAAgttgcaaataaaaatgataatataagcACCCAAGATGGCGAGCAAGGTAAGCTTAGTTTGGGTGTCAAGAGTTCTAATAAACGTAAGAAGGAGGCAAAAGCTTTTATTGCTCACGGGAAAAATAGAGCTGTAACTTCTACCTCTGTATCAAAAGATGTTGATACAGTGACTTCAAGAGAAACCAAAGTGAATGTGAAGAAGGGAGAATTGTTATCTACACCGTCTGTAGACAAGAATAAACAGGAATCAAAAGTTACTGGGAAAAAGAAGACACAGTCAGGAAGCAAGAAAAACAACAGGCTTTCTGTCAGCAATTCCTCAGAACAAGTTGCTGAAGCACAAAGTTCTAAATGTTCTTCTGAAGCTGGTGATATTGGCCAGAGCtcctcaaatattttaaagAAGAATTCAGCTGAGAGTACATCTGAAGAAGTATCGAATAGCTCTACATCAAAGAAGAACcaatccaagaaaaaaagtggTAACTCCGGTAGGAAAGAGAAATCTATAATTGCAGTAAATGGGTCAAAAAAGGGACAGAAATTGTATGAGACAAACGATGTTAAACCTCCAGGGCAAAGCACACTCAAAACACTATATCCTGCCACTGGAAAGTCTCTGGTAATTGTGGAGTCTGTTACAAAGGCAAAGGTTATTCAGGGCTTCCTTGGTGATATGTTTGAAGTCTTGCCAAGCTACGGTCATGTAAGAGACTTGGCTGCAAGGTCTGGATCTGTGCGACCTGATGATGATTTTCGTATGGTGTGGGAGGTTCCTTCTGCTTCGTGGACTCATCTTAAGAGCATCAAGGTTGCACTAAGCGGAGCAGAAAATCTCATTCTTGCATCAGACCCTGATCGTGAGGGAGAGGCTATTGCTTGGCACATCTTTGAGATGTTACAACAACAGGATGCGCTGCATGAGAATATTTCTGTGGGAAGGGTTGTCTTTCATGAAATAACCGAGCAATCTATAAAAAGTGCTCTGAACGCTCCAAGAAATATTGATGTCAATTTAGTAAATGCTTACCTTGCTCGGCGGGCTCTTGATTATTTGATTGGGTTTAACATTTCACCGTTATTATGGAGGAAACTACCAGGTTGCCAATCAGCAGGGAGAGTCCAATCTGCTGCACTTTCTCTCATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCACAGGAGTATTGGACTGTGGAGGTGCAATTGAACAGAAAAAACCCAACATCAAACAACGACTGCTGGTTGCCTGCTCACTTGACTCATTTTGATTCAAAAAAGTTGAGTCAATTTTCGATTAGATCCCAAATGGAAGCACAGATCATTGAACAAAAAATGAGTTCAGCAGATTTTCACGTTATCAGCTTGAAAAAAAGCAAACCTCGAAGAAATCCTCCAACACCGTATATAACATCGACACTTCAGCAAGATGCTGCTAACAAATTGCACTTCACAGCAAGTTACACCATGATGCTTGCCCAGAAACTGTATGAGGGGGTTGAACTATCTGATGGTAAAGCAGTGGGTCTGATAACATACATTAGAACTGATGGACTGCATATTTCTGATGAAGCTCTTGCTAATATACGCTCATTGGCCATTGAAAGGTACGGCAAAAATGGTGTACCAGAGAATGCAcggaaatattttaaaaaggtgAAAAATGCACAAGAGGCCCATGAAGCCATCAGACCAACTGACATTCGCAGATTACCATCAATGCTAGCAGGAAGGCTAGATGAAGACTCCTTGAAGCTATATACACTTATTTGGTCAAGAACAGTTGCATGTCAGATGGAACCTGCTATATTTGAGCTGTTACAACTTGATATTGGAAATTCTGATGAGTCTATTGTGTTCCGGTCTTCTAGCTCAAGGGTCAATTTTCCTGGATATCAGGCAGTTTTCAAGgACACTGAAGCTGAAGTGGTTAGAGAGAAGGAAGATGATAGTGCAAATCATGATGAAGCATTTGCGCTTGTAAATGCCTTGAAGGAAGGGGATCCATTACATCTTGGTGAAGTAGAACTTAAGCAGCACCATACACAACCTCCACCACGTTACTCTGAAGCTTCTTTGGTCAAAAAGCTAGAAGAGCTTGGCATTGGAAGACCTTCAACATATGCAAGCACATTGAAAGTTTTACAGGACAGAAACTATGTGACAGTGAAAAGCCGTGTTCTATACCCTGAATTTCGCGGTCGCATGGTTTCAGCATTTCTATCCCATCATTTCACAGAGGTCACAGACTACAGTTTCACCGCTGATATGGAGACTGAGCTTGATAATGTTTCTGCTGGATCAACTGATTGGAAAGTCCTTCTTAAAGATTATTGGACACGGCTCAAGTCATATTGTGAGCGAGCTTCTAATGTTCATATTCACCAGGTGGAGAAGAtgttggaaaagaaatttggggATTATTTGTTTACTTCTCTCCCAGATCAGAGCAGGGTGTGCCCGAGTTGTTCAGAAGGCACTTTGATTTTCAAAGTAAGTAGATTTGGGGCTGGCTACTTTATAGGCTGCGATCAGCATCCAAAATGCAAGTATATTGCTAAAACATTATATGGTGAGGACGAGGAGGAGGAAGATACACCAAATAATAACATTGCAGTAGAGGAGCCAAAACTACTAGGTGTTCACCCTAATTCAAAGGAAAAGGTTCTTTTGAAGCATGGTCCATATGGATTCTATGTTCAGCTTGGGGAAGATAGGAAGGGATACATACCTAAAAGGGCATCGTTGTCTCATATAAAAGACGTGGGTTCTGTCACACTTGAAGATGCACTGGAGTTGCTGCGATATCCATTGAAATTGGGAGACCATCCCAAGGATGGACAGCCAGTCCTATTGAAGATTGGAAAGGTTGGGTTCTCTGTTAGACATCGGCGCACAATGGCTTCTGTTCCTAAGAATATGAAGCCGAATGATGTAACTCTAGAAAAAGCACTAAAACTCTTGTCAAGTGATAATGTGAGACGATGTGGTCGGCCCAAAAGTAAAGGTAAGGTAGAGACCCTTGAAACTTTCTA 3491 0.4048 MTMIHLQRSLLSTTTASATSFTFSSPTSALHLRHFMLQFRAIRSSPNTNLSHSTLGLGSCIKCQKFSQIKFGGLRVSRTISTNHITISQSFHPLSNIDDGSRCAVVLPALARCKFMSSLNNFTSPSMAKGISRCWTIDGIFPRRFFSHSRKVANKNDNISTQDGEQGKLSLGVKSSNKRKKEAKAFIAHGKNRAVTSTSVSKDVDTVTSRETKVNVKKGELLSTPSVDKNKQESKVTGKKKTQSGSKKNNRLSVSNSSEQVAEAQSSKCSSEAGDIGQSSSNILKKNSAESTSEEVSNSSTSKKNQSKKKSGNSGRKEKSIIAVNGSKKGQKLYETNDVKPPGQSTLKTLYPATGKSLVIVESVTKAKVIQGFLGDMFEVLPSYGHVRDLAARSGSVRPDDDFRMVWEVPSASWTHLKSIKVALSGAENLILASDPDREGEAIAWHIFEMLQQQDALHENISVGRVVFHEITEQSIKSALNAPRNIDVNLVNAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEVQLNRKNPTSNNDCWLPAHLTHFDSKKLSQFSIRSQMEAQIIEQKMSSADFHVISLKKSKPRRNPPTPYITSTLQQDAANKLHFTASYTMMLAQKLYEGVELSDGKAVGLITYIRTDGLHISDEALANIRSLAIERYGKNGVPENARKYFKKVKNAQEAHEAIRPTDIRRLPSMLAGRLDEDSLKLYTLIWSRTVACQMEPAIFELLQLDIGNSDESIVFRSSSSRVNFPGYQAVFKDTEAEVVREKEDDSANHDEAFALVNALKEGDPLHLGEVELKQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTLKVLQDRNYVTVKSRVLYPEFRGRMVSAFLSHHFTEVTDYSFTADMETELDNVSAGSTDWKVLLKDYWTRLKSYCERASNVHIHQVEKMLEKKFGDYLFTSLPDQSRVCPSCSEGTLIFKVSRFGAGYFIGCDQHPKCKYIAKTLYGEDEEEEDTPNNNIAVEEPKLLGVHPNSKEKVLLKHGPYGFYVQLGEDRKGYIPKRASLSHIKDVGSVTLEDALELLRYPLKLGDHPKDGQPVLLKIGKVGFSVRHRRTMASVPKNMKPNDVTLEKALKLLSSDNVRRCGRPKSKGKVETLETF 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00259 1163 TIGRFAM topA_bact: DNA topoisomerase I 358 1005 IPR005733 GO:0003677|GO:0003917|GO:0006265
Bva10g00259 1163 PANTHER BNAA01G05990D PROTEIN 220 1153 - -
Bva10g00259 1163 SMART topIban2 462 550 IPR003601 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 SMART topIaneu2 609 890 IPR003602 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 MobiDBLite consensus disorder prediction 211 324 - -
Bva10g00259 1163 Pfam Topoisomerase DNA binding C4 zinc finger 970 1006 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Bva10g00259 1163 MobiDBLite consensus disorder prediction 247 308 - -
Bva10g00259 1163 Gene3D Topoisomerase I, domain 3 542 837 IPR013825 -
Bva10g00259 1163 Gene3D Topoisomerase I, domain 2 496 931 IPR013824 -
Bva10g00259 1163 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 646 669 IPR023406 GO:0003917
Bva10g00259 1163 Gene3D - 353 492 - -
Bva10g00259 1163 SUPERFAMILY Prokaryotic type I DNA topoisomerase 356 980 IPR023405 -
Bva10g00259 1163 Pfam DNA topoisomerase 486 927 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 SMART toprim5 356 456 IPR006171 -
Bva10g00259 1163 Hamap DNA topoisomerase 1 [topA]. 356 1116 IPR028612 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 PRINTS Prokaryotic DNA topoisomerase I signature 660 669 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 PRINTS Prokaryotic DNA topoisomerase I signature 430 443 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 PRINTS Prokaryotic DNA topoisomerase I signature 520 538 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 PRINTS Prokaryotic DNA topoisomerase I signature 853 867 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 PRINTS Prokaryotic DNA topoisomerase I signature 738 754 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 Pfam Topoisomerase C-terminal repeat 1095 1142 IPR025589 -
Bva10g00259 1163 Pfam Topoisomerase C-terminal repeat 1034 1092 IPR025589 -
Bva10g00259 1163 ProSiteProfiles Toprim domain profile. 356 471 IPR006171 -
Bva10g00259 1163 CDD TOPRIM_TopoIA_TopoI 356 483 IPR034149 -
Bva10g00259 1163 Pfam Toprim domain 358 471 IPR006171 -
Bva10g00259 1163 Gene3D Topoisomerase I, domain 4 617 753 IPR013826 -
Bva10g00259 1163 Gene3D Bacterial Topoisomerase I, domain 1 963 1017 - -
Bva10g00259 1163 CDD TOP1Ac 489 937 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bva10g00259 1163 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 220 1153 IPR000380 GO:0003677|GO:0003917|GO:0006265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00259 - - jre:109009551 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00259 10 3618111 3629535 Bva10g00259 10 3618111 3629535 ECH