LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00223	ATGGCTCCACCAGCACAGTCTCAGCGATCTTCTTCGCCGTCGCAACCATCCGGGAAAGGTGAAGTCTCAGATCTTAAATCACAACTTCGGCAGCTTGCTGGGAGCCGAGCTCCAGGAGTTGATGATTCAAAGCGTGAGCTCTTCAAGAAGGTGATTTCCTACATGACGATAGGTATTGATGTCTCAGCTCTCTTTGGTGAGATGGTGATGTGCTCAGCAACATCAGACATTGTCCTGAAGAAAATGTGTTACCTATATGTCGGGAATTATGCAAAGGTCAATCCTGATCTTTCACTTTTGACGATTAATTTTCTACAAAGAGATTGCAAGGATCAGGATCCCATGATTCGGGGTCTAGCGTTGAGGAGCTTGTGTTTACTAAAAGTGGCAAACCTGGTGGAGTATTTGGTTGGGCCTTTAGGATTAGGATTAAAGGACAGTAATAATTATGTGAGGATGGTGGCAGTTAACGGggttttaaaactttatcatATATCAGCTTCCACATGTATTGATGCAGATTTTCCGGCAACTCTAAAGCATTTGATGTTTAATGACCCTGATACTCAGGTAGTTGCAAATTGTTTGTCTGCCTTACAAGAGATTTGGACCTTAGAGGCAAGCACATCAGAGGAAGCAGCTagggaaagagaaaatctACTTAGCAAGTCAATTGTATATTACTTTCTGAATCGAATTAAGGAATTTAATGAGTGGGCACAATGTCTTCTGCTGGAGTTGGTGGCCAAGTATGTTCCTTCAGATAGCAATGAAATATTTGACATCATGAATGTCCTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTATAAAAGTATTTCTACAATTGACTCTGTCAATGACTGATGTTCATCAgcagGTATATGAGCGCATTAAAGCTCCTCTCTTAACTCTAGTGAGTTCAGGAAGTCCAGAACAATCTTATGCGGTTTTAAGTCATCTGCATCTCTTGGTGATGCGTGCaccttatatattttcttcagaCTACAAACACTTCTATTGTCAGTATAATGAGCCATCTTATGTAAAAAAGTTGAAGCTTGAAATGTTAACTGCCGTTGCAAATGAAAGCAACACCTATGAGATAGTAACGGAATTATGTGAATATGCTGCCAATGTTGACATTCCAATTGCAAGGGAGTCAATTCGGGCTGTTGGGAAGATAGCACTGCAGCAGTATGATGTTAATGCTATTGTTGATCGCCTTTTGCAGTTTTTGGAGATGGAAAAGGACTTTGTTACTGCTGAAGCTCTGGTGCTTGTAAAAAATCTTCTTAGAAAGTATCCCCAGTGGAGTCAGGATTGTATTGCTGTAGTTGGGAATATCAGCAGCAAAAATGTTCAAGAGCCCAAAGCCAAGGCAGCACTTTTATGGATGTTGGGAGAATATGCTCAGGACATGCATGATGCTCCTTATGTCTTGGAGAGCTTAATTGAAAATTGGGATGAGGAACATTCTGCTGAGGTTCGCTTACATCTTCTCACTGCAGTTATGAAGTGTTTCTTTAAGAGAGCACCTGAGACTCAGAAAGCACTGGGAGCTGCATTAGCTGCTGGACTTGCCGATTTTCACCAGGACGTTCATGATAGGGCCTTATTGTACTACAGGCTTCTGCAATACAATGTATCAATGGCAGAACGTGTGGTGAACCCTCCAAAGCAAGCTGTCTCTGTGTTTGCTGATACTCAGAGCAGTGAAATCAAAGATCGCatatttgatgaatttaaCAGTTTGTCTGTTGTATACCAAAAGCCTTCTTACATGTTTACTGATAAAGAACACCGGGGACCGTTTGAGTTTTCAGATGAACTTGGAAATTTGTCTATTAGTGCAGAAGCTGCGGATACTGTTGTTCCAGCTCAGAGGGTGGAAGAAAACGACAAGGATTTGCTTCTCAGTGTTTCAGAAAAAGAGGATGGCAGAGATGCAAGTGGCAATGGTTCTGCCTATAGTGCTCCTTCCTACAATTCATCCACCCCTGCTGCAACTTCACAAACAAATTCATCCCCGGCGTCTAGTTTCGCAATTGATGATCTGCTTGGTCTAGGTTTTCCTTCTGAAACTGCTGCTATGCCTTCACCTCCCCCCTTGAAACTCAAGCAAAAAGCTGTTTTGGATCCTGGCACGTTTCAGCAAAAATGGCGCCAACTGCCTGTATCTTTATCACAgGAATATTCATTAAGTCCTCAAGGAGTTGCCTCATTGACAGCTCCCCACGTACTCCTCCAGCACATGCAAGGTCACTCGATCCACTGCATTGCGTCAGGTGGTCAGCCCCCTAACTtcaagttctttttctttggtcaAGAAGCGGAAGAAGAATCAACATTTCTTGTAGAGTGTATAATCAACACATCGTCAGCCAAGTCCCAGATTAAGATAAGAGCTGATGACCAAAGTTCATCCCAGGCATTCTTAACATTGTTTCAATCAGCTCTATCCAAATTTGGTTTGCCTTA	2495	0.412	MAPPAQSQRSSSPSQPSGKGEVSDLKSQLRQLAGSRAPGVDDSKRELFKKVISYMTIGIDVSALFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLSLLTINFLQRDCKDQDPMIRGLALRSLCLLKVANLVEYLVGPLGLGLKDSNNYVRMVAVNGVLKLYHISASTCIDADFPATLKHLMFNDPDTQVVANCLSALQEIWTLEASTSEEAARERENLLSKSIVYYFLNRIKEFNEWAQCLLLELVAKYVPSDSNEIFDIMNVLEDRLQHANGAVVLATIKVFLQLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDFVTAEALVLVKNLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALLWMLGEYAQDMHDAPYVLESLIENWDEEHSAEVRLHLLTAVMKCFFKRAPETQKALGAALAAGLADFHQDVHDRALLYYRLLQYNVSMAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGPFEFSDELGNLSISAEAADTVVPAQRVEENDKDLLLSVSEKEDGRDASGNGSAYSAPSYNSSTPAATSQTNSSPASSFAIDDLLGLGFPSETAAMPSPPPLKLKQKAVLDPGTFQQKWRQLPVSLSQEYSLSPQGVASLTAPHVLLQHMQGHSIHCIASGGQPPNFKFFFFGQEAEEESTFLVECIINTSSAKSQIKIRADDQSSSQAFLTLFQSALSKFGLP	831

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g00223	831	MobiDBLite	consensus disorder prediction	1	40	-	-
	Bva10g00223	831	MobiDBLite	consensus disorder prediction	1	30	-	-
	Bva10g00223	831	MobiDBLite	consensus disorder prediction	645	682	-	-
	Bva10g00223	831	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	714	825	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Bva10g00223	831	MobiDBLite	consensus disorder prediction	659	682	-	-
	Bva10g00223	831	Gene3D	-	12	608	IPR011989	-
	Bva10g00223	831	PANTHER	AP-4 COMPLEX SUBUNIT BETA-1	16	829	-	-
	Bva10g00223	831	SMART	B2_adapt_app_C_2	709	826	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Bva10g00223	831	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	16	829	IPR026739	GO:0016192
	Bva10g00223	831	PIRSF	Beta_adaptin	10	831	IPR016342	GO:0015031\|GO:0030276
	Bva10g00223	831	SUPERFAMILY	ARM repeat	27	598	IPR016024	-
	Bva10g00223	831	Pfam	Adaptin N terminal region	37	551	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Bva10g00223	831	Gene3D	-	697	829	IPR012295	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00223	Bva-Chr10	3418473	3424483	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g00223	-		-	gmx:100801153	1425.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva10g00223	10	3418473	3424483	Bva10g00223	10	3418473	3424483	ECH