Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00222 ATGGCGTTAGCTAATAGGGTTTTATCATCGGTGACCAAGACGTGTGGAAGGCTTCGCTTTGTAGCACTTGCTTCAACTTCTCAccgtttattttttcacaaagattcaaattcaaattctttgcTCATCAAATTGCTTCACGTGCCCAATTCGAGCATCAAATCCACGCTGGATGAGCAAATGTGTTCCCTCAAAAGCTCGGAATTTTCTTGGGAATTTCTGGTTACTTCTCTGcgatcttcttcttctgagaAAGCTCGACTGGTTTTGGAATGGATTTTGGACAAGGTGcttagagaaaaagaaagagaccaTGGTCTTTTCTCCGAGCTCATCACTCTTTGTGGAAAGCTTCATAATGTGCCACTAGCAATGCACGTCTTTACTTCTATGGAAGCTAATGGAGTTAAACCCACTTCCCTGGTTTTTAATTCCCTTATAAATACTTGCTTGTTTTCAAATAATGTTGTTACGGCATTTAGCTTATTTGAGATAATGGAGAGGTCAGATAGCTATAAGCCTGACTTTCACacttataatatctttatttcaGCATTTTCCAAGTCAGGGAATGTTGATGCCATGTTATCGTGGTACTCGGCTAAAAAGACTGCGGGGCTTGGTCCTGACCTTCAAACATTTGAATCCCTTATCTCGGGATGTGTTAAATCGGGAAATTTTGAGACTGCTGATAGAATCTATGAAGAAATGATGGTTTCTGGAATTATACCTAGTATAACCATACTGGAAAACATGCTTGAAGGGATCTGTAAGCAGAAAAATCTGGGCCAAGCTGAGGAGTTCTTTAAAACTGTGTTGGTTGCTGGATGGGAAATCAATGACAATATGGTCGAGAAGttaatatcattatatattgaattaaaGCAAGTGCAAAAGATGGAGGAGCTTCTTGAAACTATGACAAAGACTGCTCCAATTACTGGAGTTCTCTCACGAATCCATTGTGGGATTATAGGGGTATATGCCATGTTAGATAGATTGGATGATGTTGAGTATGCTGTGGGAAGAATGTTAAAAGTTGGGCTATCATTCACATGTGCAGACGATGTTGAAAAGGTTATCTGTTCATACTTTAGACGAGAAGCTGATGATAGGCTAGACATATTCTTAGAATGCATAAAGAGTTGCTATATGCTCACTGGATCAACATATGACTTGTTGATAGCTGGCTATAGAAGAGCAGGCCTACATGACAAAGTAGACATAGTGATGGTAGACATGAAAGTAGCTGGATTTGCATA 1262 0.3669 MALANRVLSSVTKTCGRLRFVALASTSHRLFFHKDSNSNSLLIKLLHVPNSSIKSTLDEQMCSLKSSEFSWEFLVTSLRSSSSEKARLVLEWILDKVLREKERDHGLFSELITLCGKLHNVPLAMHVFTSMEANGVKPTSLVFNSLINTCLFSNNVVTAFSLFEIMERSDSYKPDFHTYNIFISAFSKSGNVDAMLSWYSAKKTAGLGPDLQTFESLISGCVKSGNFETADRIYEEMMVSGIIPSITILENMLEGICKQKNLGQAEEFFKTVLVAGWEINDNMVEKLISLYIELKQVQKMEELLETMTKTAPITGVLSRIHCGIIGVYAMLDRLDDVEYAVGRMLKVGLSFTCADDVEKVICSYFRREADDRLDIFLECIKSCYMLTGSTYDLLIAGYRRAGLHDKVDIVMVDMKVAGFA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00222 420 Gene3D Tetratricopeptide repeat domain 57 202 IPR011990 GO:0005515
Bva10g00222 420 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 419 - -
Bva10g00222 420 TIGRFAM PPR: pentatricopeptide repeat domain 213 245 IPR002885 -
Bva10g00222 420 TIGRFAM PPR: pentatricopeptide repeat domain 177 200 IPR002885 -
Bva10g00222 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Bva10g00222 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Bva10g00222 420 Pfam PPR repeat 213 242 IPR002885 -
Bva10g00222 420 Pfam PPR repeat 389 419 IPR002885 -
Bva10g00222 420 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 419 - -
Bva10g00222 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Bva10g00222 420 Pfam PPR repeat family 138 188 IPR002885 -
Bva10g00222 420 Gene3D Tetratricopeptide repeat domain 203 322 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00222 104 420 Glycosyltransferase AT1G05670 22.812 8.94e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00222 - - ccaj:109813006 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00222 10 3415830 3418083 Bva10g00222 10 3415830 3418083 ECH