Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00218 atgaagaaaggaaggatCGAACCAGTGAAAATCAAGgGGAATCATCTTAATGATGGCAATCATCAACCTAATCAAGGTGCCACGGCTACAGACTCGGAAAGCCAATCCTCCTGCTTTTTCTGTATGGGCGGAAAGAGCTGCGAAACTGTGCGctcaagaacaaaattaatgaatattctgattgaaagaagaaaacctcAAGAAGCCAACGCCATCTTTGAAAATCTGATTGAAGGAGGGCACCGCCCATCTTTGGAAACATACACCGCCATGTTGGATTCCTTGACCATCCAGAAGCGCTTCAAGTCTATACATTCCATTGTCTCTCAGGTGGAAGAGAAAGGATTGAAGCCTGACTCAGTATTCTTTAATGCTCTTATAAATGCATTTTCTGAATCTGGGAACCCGGAGGAAGCCATGAAAACCTTCCAGAAGATGAAAGAGAGTGGACTAAGACCAACTACTAGAACTTATAACACATTGATGAAAGGGTATGGAATTGCTTGTAAACCTGAAGAATCAATGAAACTGTTGGAACTGATGAATGTCGAGGGAAATGTGAAACCCAATCTCAGGACatataatattcttataaGAGCATGGTGTAAAAAGAATGACATTTCAAAGGCATGGGAGATGGTACATAAAATGGCAGCTTCTGAAATAAAACCAGATGTTGTTACATTCAACACAATAGTATCGGCTTATTCTCAGAATGGAGAGACAACTCTGGCTGAAGCAATGATTTTGGAGATGCAGAGACAGGGTGCACAGCCCAATCAGAGAACCTGCGGCATCATCATAAGTGGATACTGCAGAGAAGGTAAAATAAAGGAAGCCCTGAGATTCGTATACAGGATAAGGGATCTCGGACTGCATCCTAATCTTTTTATGTTCAACTTCCTAATTAGAGGTTTTGTGGAAGTGATGGATAGAGATGGTGTTGATCAGGTTTTGAAGTTGATGGAAGAATTTCAGGTCAAGCCAGATGTGATAACATATAGTACTATAATGAATGGGTGGAGCTCAGCTGGATTTTTGGAGAAATGCAAGGAAATTTTTAATGACATGTTGAAGTCTGGTGTAGAACCAGATGCGCATGCTTACAGCATTCTTGCTAAAGGTTATGTGCGTGCCCAAGAACCAGAAAAGGCTGAAGAAGTGCTTACTGCCATGATTAAATCCGGCCTTCACCCTAATGTTGTCACATTCACAACTGTCATATGCGGATGGTGCCGTACTGGCAGAATGGATAATGCTATCAGGGTTTTTGACATGATGTGTGAATTTGGGATTTCCCCAAATTTGAAGACATTTGAGACACTAATTTGGGGATATGTAGAAGCAAAACAGCCATGGAATGCAGAAGGAGTACTCAAAATAATGGAAGAATTTCATGTTCTGCCAGAGAAATCTACATTCTCACTTCTCGCAGAAGCTTGGCGTTCCACTGGCTTaacaaaagaggaagaaatccCGGCTGAAAGCTTAGAGAAGATTTACCCAAAGCCACATACGAGTGCCCCTCACTCAATTCTCTCACAGATACCAACGGTAGTTAGAAGTGGTCAAAAGGGCTCAGCTTTAGAAGCCAAGAAAAATCGAATGTTCTTCAGAGATACTGATTTGGAAAGTTCATCCCTGgcaacaaaatttaagtgttttTCTCAAACTTGTAGATTTGGTGGAGGATTTTCCCTCATATGCCAGAAACAGTTTAGAGGTCAGCATGGTGTATACCGACTTGGAAATTCATGTACAGCAGTATTCTTGAACTG 1778 0.3931 MKKGRIEPVKIKGNHLNDGNHQPNQGATATDSESQSSCFFCMGGKSCETVRSRTKLMNILIERRKPQEANAIFENLIEGGHRPSLETYTAMLDSLTIQKRFKSIHSIVSQVEEKGLKPDSVFFNALINAFSESGNPEEAMKTFQKMKESGLRPTTRTYNTLMKGYGIACKPEESMKLLELMNVEGNVKPNLRTYNILIRAWCKKNDISKAWEMVHKMAASEIKPDVVTFNTIVSAYSQNGETTLAEAMILEMQRQGAQPNQRTCGIIISGYCREGKIKEALRFVYRIRDLGLHPNLFMFNFLIRGFVEVMDRDGVDQVLKLMEEFQVKPDVITYSTIMNGWSSAGFLEKCKEIFNDMLKSGVEPDAHAYSILAKGYVRAQEPEKAEEVLTAMIKSGLHPNVVTFTTVICGWCRTGRMDNAIRVFDMMCEFGISPNLKTFETLIWGYVEAKQPWNAEGVLKIMEEFHVLPEKSTFSLLAEAWRSTGLTKEEEIPAESLEKIYPKPHTSAPHSILSQIPTVVRSGQKGSALEAKKNRMFFRDTDLESSSLATKFKCFSQTCRFGGGFSLICQKQFRGQHGVYRLGNSCTAVFLN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00218 592 Pfam Pentatricopeptide repeat domain 106 166 IPR002885 -
Bva10g00218 592 MobiDBLite consensus disorder prediction 17 31 - -
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Bva10g00218 592 Pfam PPR repeat 186 217 IPR002885 -
Bva10g00218 592 PANTHER OS01G0228400 PROTEIN 1 592 - -
Bva10g00218 592 Pfam PPR repeat family 399 446 IPR002885 -
Bva10g00218 592 Pfam PPR repeat family 329 377 IPR002885 -
Bva10g00218 592 Pfam PPR repeat family 224 273 IPR002885 -
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Bva10g00218 592 Gene3D Tetratricopeptide repeat domain 29 168 IPR011990 GO:0005515
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Bva10g00218 592 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 592 - -
Bva10g00218 592 MobiDBLite consensus disorder prediction 1 31 - -
Bva10g00218 592 Gene3D Tetratricopeptide repeat domain 322 516 IPR011990 GO:0005515
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 332 366 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 123 154 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 157 190 IPR002885 -
Bva10g00218 592 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Bva10g00218 592 Gene3D Tetratricopeptide repeat domain 251 321 IPR011990 GO:0005515
Bva10g00218 592 Gene3D Tetratricopeptide repeat domain 175 250 IPR011990 GO:0005515
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Bva10g00218 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Bva10g00218 592 SUPERFAMILY HCP-like 120 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00218 Bva-Chr10 3403230 3407490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00218 192 516 Glycosyltransferase AT1G05670 24.324 1.50e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00218 K17710 - gmx:100779093 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00218 10 3403230 3407490 Bva10g00218 10 3403230 3407490 ECH