Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00181 ATGGCTTCCAGTTTCACAGTATTGCCGACCATAAGAAACTCCCTTTCATGGCCAACCATGGTGGCTTCTGATCATTATAATAACAAGGGAGAGCTTTCATTTGGGAGCATGCCCATCTTCAAAAGCCAACGCAACGTTAATCTTCAAGATCACTTGACCGTCGCAAATGTAGCGAGCCCATTACCTGAGGTTGCTCCCCCGCCACCAGAAAGCTCCGGAAGCACCGACGGCCACCACCATGTTGCATGGACCAGTATCCTGCAAGAGAGATGGGAAGGAGAGCTAGTTGTTGAAGGAGAGATACCACTATGGCTGAACGGGACGTACCTAAGGAATGGTCCGGGACTGTGGCATATTGGGGACTACAACTTCAGGCACATGTTTGATGGCTATGCGACTCTAGTGAAGCTTCAGTTTGAGAACGGCCGGTTAATCGCCGGCCACCGCCAAATTGAATCGGAAGCCTACAAAGCGgcaaagaagaataaaaaaatatgttaccGTGAATTTTCTGAAGTTCCTAAGCCTGCTAATTTCTTGGCCAATATGGTTGATCTTGCCAGCTTGTTCTCTGGTGCTTCATTGACTGACAATGCTAACACTGGTGTGGTGAAGCTGGGTGACGGGCGGGTGGTTTGCCTGACCGAGACCCAAAAAGGGTCCATAGTGATTGACCCGAACACGTTGGAGACGTTGGGGAGATTTCAATACACTGACTCATTGGGAGGTCTAATACACTCTGCACATCCAATTGTGACAGATTCTGAATTTTTGACGCTATTGCCAGACTTGATCAACCCGGGTTACTTGGTGGTCAGGATGGTGCGCGGGAGCAACGAGCGGAAGGTGATCGGGCGGGTGGATTGTCGGGGCGGGCCATCCCCCGGGTGGGTCCACTCTTTTCCAGTGACCGAACACTACGTTATCGTGCCAGAAATGCCATTGAGATATTGCGCGCAAAATTTGCTGAAGGCTGAGCCCACACCATTATACAAGTTTGAGTGGCACCCTCAGTCAAAAGGGTTTATGCACGTTATGTGCAAGGCTAGTGGCAACATTGTGGCAAGCGTGGAGGTGCCTGTGTACATTACGTTCCATTTCATAAATGCATAcgaagaggaagatgaagacGGAAGGGTGACAGCAGTAATTGCGGACTGTTGTGAGCATAATGCAAACACCACCATTCTTGAGAGGCTTAGGCTACAGAATCTGCGCTCCTTCAACGGCGAAGATGTGCTACCGGATGCTAGggtTGGACGGTTCATAATTCCATTGGATGGGAGTGGATATGGCAAGTTAGAGGCAGCATTAGATCCAGATGAACACGGGAGAGGGATGGACATGTGCAGCATCAACCCTAACTTTCTGGGAAAAAAATACAGATATGCTTATGCATGTGGAGCGCAGCGCCCTTGTAACTTCCCTAACACTCTCACCAAGcTGGATTTTGTGGAGAAGAAGGCAACAAACTGGTACGATGAAGGCGCTGTTCCCTCAGAACCCCTCTTTGTGGCTAGACCTGGGGCAACTGAGGAAGATGATGGCGTGGTAATTTCCATAATCAGTGAGAAAAGCGGAGGAGGATACGCCTTGTTGTTAGATGGTTCCACCTTCCAAGAGATTGCCAGAGCCAAGTTCCCTTATGGACTGCCTTACGGCTTGCACGGATGCTGGGTTCCAAAACAGTA 1691 0.4837 MASSFTVLPTIRNSLSWPTMVASDHYNNKGELSFGSMPIFKSQRNVNLQDHLTVANVASPLPEVAPPPPESSGSTDGHHHVAWTSILQERWEGELVVEGEIPLWLNGTYLRNGPGLWHIGDYNFRHMFDGYATLVKLQFENGRLIAGHRQIESEAYKAAKKNKKICYREFSEVPKPANFLANMVDLASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPNTLETLGRFQYTDSLGGLIHSAHPIVTDSEFLTLLPDLINPGYLVVRMVRGSNERKVIGRVDCRGGPSPGWVHSFPVTEHYVIVPEMPLRYCAQNLLKAEPTPLYKFEWHPQSKGFMHVMCKASGNIVASVEVPVYITFHFINAYEEEDEDGRVTAVIADCCEHNANTTILERLRLQNLRSFNGEDVLPDARVGRFIIPLDGSGYGKLEAALDPDEHGRGMDMCSINPNFLGKKYRYAYACGAQRPCNFPNTLTKLDFVEKKATNWYDEGAVPSEPLFVARPGATEEDDGVVISIISEKSGGGYALLLDGSTFQEIARAKFPYGLPYGLHGCWVPKQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00181 563 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 47 562 - -
Bva10g00181 563 PANTHER BETA-CAROTENE DIOXYGENASE 47 562 IPR004294 GO:0016702
Bva10g00181 563 Pfam Retinal pigment epithelial membrane protein 89 561 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00181 Bva-Chr10 3195157 3198227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00181 K17913 - gmx:100814148 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00181 10 3195157 3198227 Bva10g00181 10 3195157 3198227 ECH