Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00159 ATGGGGCGCGCGGTTCTGTCGCATTTCCTGGTTCTATCGACTAGTTCACCAGGCTTCGCCCCCTCACAATTTTTGAAAGCACCTGCCACGAGTCTTCTTCGTTCTCGTCGTCCAATCAGCCTCAGCGGTGCAAGCTTCCGGTGTTGTACTAGTAGTGTATCTGTTCCAGAGACTACTCCAACCTCTTCAAAGAAACGAATAGTGTCAGGAATTCAGCCCACGGGATCAATTCATCTTGGGAATTACCTTGGTGCCATAAGGAATTGGGTTTCACTTCAGAATGCATATGATACACTGTTCTTCATTGTGGATCTGCATGCGATTACATTACCTTATGACACGCAAGAACTGTCTAGGACAACAAGGGAAACAGCAGCCATTTATCTGGCCTGTGGCGTGGATGCTTCAGAGGGTTCTATATTTGTACAGTCTCATGTTCGTGCACATGTAGAATTGATGTGGCTATTAAGTTCTGCAACACCAATTGGTTGGTTGAACAAAATGATTCAGTTTAAAGAAAAGTCCCGCAAGGCGGGGGATGAGAACGTTGGGGTTGCTCTTTTGACTTACCCTGTTTTGATGGCTTCTGATATTCTTCTATATCAGTCTGACTTTGTCCCAGTTGGTGAAGATCAAAAGCAGCACTTGGAGCTGACCCGTGAGATAGCTGAACGGATTAATTATCTGTATGGAGGAAGGAGGTGGAAGAAATTAGGCGGCCGAGGTGGTGCTATATTTAAGGTTCCAGAGCCTCTTATACCTCCTGCTGGAGCCCGAGTTATGTCCCTAACTGACGGTTTTTCTAAGATGTCAAAGTCAGCGCCCTCTGATCAATCCAGAATCAATATTCTTGATTCAAAAGATCTTATAGCAAATAAGATAAAACGTTGCAAAACTGATTCATTCCCGGGGTTGGAATTTGATAATCCCGAAAGGCCCGAATGTAACAATCTTCTTACCATATACCAGATCGTTTCTAACAAGACAAAAGAGGAAGTCGTACAAGAATGCCAAAACATGAACTGGGGCACATTTAAACCTCTTTTAACAGATGCCTTGATTGATCATCTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGACTGATTCTGGTTATTTGGATGGAATTTTAGCAGAAGGGGCTAGAAAAGCTGCAGTTATAGCAGATGCCACACTCCATAATGTTTACCAGGCAATGGGATTCTTGAGGAGACAGCCATA 1223 0.4399 MGRAVLSHFLVLSTSSPGFAPSQFLKAPATSLLRSRRPISLSGASFRCCTSSVSVPETTPTSSKKRIVSGIQPTGSIHLGNYLGAIRNWVSLQNAYDTLFFIVDLHAITLPYDTQELSRTTRETAAIYLACGVDASEGSIFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREIAERINYLYGGRRWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGFSKMSKSAPSDQSRINILDSKDLIANKIKRCKTDSFPGLEFDNPERPECNNLLTIYQIVSNKTKEEVVQECQNMNWGTFKPLLTDALIDHLHPIQVRYEEIMTDSGYLDGILAEGARKAAVIADATLHNVYQAMGFLRRQP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00159 407 CDD TrpRS_core 66 354 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bva10g00159 407 Gene3D - 262 372 - -
Bva10g00159 407 Gene3D HUPs 67 401 IPR014729 -
Bva10g00159 407 Pfam tRNA synthetases class I (W and Y) 64 357 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00159 407 PRINTS Tryptophanyl-tRNA synthetase signature 127 146 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bva10g00159 407 PRINTS Tryptophanyl-tRNA synthetase signature 269 279 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bva10g00159 407 PRINTS Tryptophanyl-tRNA synthetase signature 77 93 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bva10g00159 407 PRINTS Tryptophanyl-tRNA synthetase signature 204 225 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bva10g00159 407 Hamap Tryptophan--tRNA ligase [trpS]. 64 403 IPR024109 GO:0004830
Bva10g00159 407 PANTHER BNAA04G15180D PROTEIN 34 402 - -
Bva10g00159 407 TIGRFAM trpS: tryptophan--tRNA ligase 64 402 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Bva10g00159 407 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 73 82 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva10g00159 407 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 34 402 - -
Bva10g00159 407 SUPERFAMILY Nucleotidylyl transferase 65 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00159 Bva-Chr10 3087138 3093119 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00159 K01867 - tcc:18588001 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00159 10 3087138 3093119 Bva10g00159 10 3087138 3093119 ECH