Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00156 ATGCCTCCTCGTTTCTCCATTCTCCTCCGCCCCCTCCAGCTTCGGCCCTTGGCCTCGGGCCCTGCAATGGCGCGTGCCATTACTTGCGCCGCCCAACTTCCCATCTACCCCGCCCCGAAGAATGCCACCCCTATCCGTTCTTCTCTGTATTCCCCTTTCGTTCATTTTTCTCGTCGTTTCGATGCTTCTTTGTCTGTGAACTCCTCGCTCTTTGGTCGGAGATTCAATGTTCTTTGTCGAAATGAAGTGAAATATTTGGGAGCGTTGGGGGCAGTCCGTGCCGAGAAGAGGGAGTATCGGAAGGTCAGAAGGCGAGCACCAAAGgttaaagagaagaaattggaACTCAGCGTCGACATTTGCATTGAAGAAGAATTGCCTGACGATCCTGAGATTTTGAGCATTGCAGAGTTGCTTCGTCTAAATGTGCCAATGGCAATGAAGTTGGCGTTTGATGGTTTAATAGATTCAGGATATAAAACGAGGGACACAGCAATAAGTGATGTTGGTGGTTTTGAAAGTGTTGAGTTATCTGTGCTTCTTTGCAATGATGAGTTTATTCTCAAACTTAATAAGGAGTGGAGGGACGAGGATCGTGCCACTGATGTTCTCTCAATGTCACAACATGTCCCTGAGCTTAAGCTACCTATTCTTATGTTGGGTGACATTGTAATTTCGGTTGAGACAGCTGCAAGACAAGCAGAGGAAAGAGGGCACACTTTTCTTGATGAAATACGCATCCTCATGGTTCATGGTTTGTTACATCTTTTAGGATTTGATCATGAAGTTAGTGAAGAGGCTGAAGCTGAGATGGAGAAAGAGGAGGAACTCCTTTTAAGGAGTCTTGGTTGGAAAGGAAAAGGGCTGATACAGAGTGCATATGATGCCAAAGCCAATTCAAATCCTCTTGAAGACAATTCAGATGACAGGAGGAAAGAAGGCAGACTTAGATTTTATAAACCAAAGTTCAGCTATATCTTCTGTGACATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTCCAACAACTGCCAAGGCTTTGAGAGAGGTCTTGTCAAGGGGTGTGAAAATTGTGATAGCCACCGGAAAAGCTCGGCCAGCTGTAATAGATATTTTCAAGATGGTGGGTTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCCGGCGTCTTCTTGCAGGGATTGCTTGTTTACGGTAGACAAGGTCGGGAAATTTTTAGAAGCAACTTAGATCCAAATATTTGTAGAGAGGCATGTCTTTATTCTTTGGAGAATAAGGTTCCCCTTGTTGCATTTTGTGAGAATCGCTGCCTAACCCTTTTTGAACACCCACTTGTTGATTCACTGCATACAGTATACCATGAACCTAAGGCAGAGGTCATGCGTTCTACTGAACATCTCCTGGCTGCTGCTGACATAcagaaaatgattttctttgaCACCGCTGAGAGAGTAGCTGGTAAGTTGCGGCCACACTGGTCAGGGGTAACAGAAGATCGTGCCACTGTCATACAAGCTGTGCCAGACATGCTGGAAATTGTACCTTTGGGCACATCAAAAGGGAATGGAGTAGAAATGCTGCTAGATCATTTGGGGGTTACTGCTAAGGAGgTAATGGCTATTGGTGATGGGGAAAATGATGTTGAGATGCTTGAACTGGCTTCTCTAGGCGTTGCTCTTAGTAATGGATCGGAGAAGACAAAAGCCGTGGCAAACGTAATTGGTTCGAGCAATGATGAAGACGGTGCAGCTGATGCAATCTACCGCCAGGAATCTACAATATA 1793 0.4434 MPPRFSILLRPLQLRPLASGPAMARAITCAAQLPIYPAPKNATPIRSSLYSPFVHFSRRFDASLSVNSSLFGRRFNVLCRNEVKYLGALGAVRAEKREYRKVRRRAPKVKEKKLELSVDICIEEELPDDPEILSIAELLRLNVPMAMKLAFDGLIDSGYKTRDTAISDVGGFESVELSVLLCNDEFILKLNKEWRDEDRATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTFLDEIRILMVHGLLHLLGFDHEVSEEAEAEMEKEEELLLRSLGWKGKGLIQSAYDAKANSNPLEDNSDDRRKEGRLRFYKPKFSYIFCDMDGTLLNSKSQISPTTAKALREVLSRGVKIVIATGKARPAVIDIFKMVGLAGKDGIVSEFSPGVFLQGLLVYGRQGREIFRSNLDPNICREACLYSLENKVPLVAFCENRCLTLFEHPLVDSLHTVYHEPKAEVMRSTEHLLAAADIQKMIFFDTAERVAGKLRPHWSGVTEDRATVIQAVPDMLEIVPLGTSKGNGVEMLLDHLGVTAKEVMAIGDGENDVEMLELASLGVALSNGSEKTKAVANVIGSSNDEDGAADAIYRQESTI 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00156 597 Hamap Endoribonuclease YbeY [ybeY]. 117 286 IPR002036 GO:0004222|GO:0006364
Bva10g00156 597 ProSitePatterns Hypothetical cof family signature 1. 325 336 - -
Bva10g00156 597 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 325 562 IPR006379 -
Bva10g00156 597 Gene3D - 326 590 IPR023214 -
Bva10g00156 597 Gene3D Metalloproteases ("zincins"), catalytic domain 156 283 IPR023091 GO:0004222
Bva10g00156 597 ProSitePatterns Uncharacterized protein family UPF0054 signature. 251 261 IPR020549 -
Bva10g00156 597 SFLD Haloacid Dehalogenase 326 592 - -
Bva10g00156 597 Pfam Endoribonuclease YbeY 171 281 IPR002036 GO:0004222|GO:0006364
Bva10g00156 597 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 23 592 IPR002036 GO:0004222|GO:0006364
Bva10g00156 597 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 176 282 IPR002036 GO:0004222|GO:0006364
Bva10g00156 597 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 167 289 - -
Bva10g00156 597 SUPERFAMILY HAD-like 319 591 IPR036412 -
Bva10g00156 597 ProSitePatterns Hypothetical cof family signature 2. 544 566 - -
Bva10g00156 597 CDD HAD_Pase 326 592 - -
Bva10g00156 597 Gene3D - 412 519 - -
Bva10g00156 597 Pfam haloacid dehalogenase-like hydrolase 326 590 - -
Bva10g00156 597 TIGRFAM Cof-subfamily: Cof-like hydrolase 325 590 IPR000150 GO:0016787
Bva10g00156 597 SFLD C2.B: Phosphomannomutase and Phosphatase Like 326 592 - -
Bva10g00156 597 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 23 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00156 Bva-Chr10 3068058 3073519 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00156 - - adu:107495129 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00156 10 3068058 3073519 Bva10g00156 10 3068058 3073519 ECH