Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00138 ATGTCAGTTCCGCTGACACCTTCTAAGAGGCCAAATGATAGAGGCCCTGTAGAGTCAAATGGGAAAGGGAAGTGGCAAAAGTTAGCAGGCGTTCATTCATCAAGTCAAGCCTTGAAAGTTTCTCCTGGGAGTGTTGTCTTCCGATTGCTCTGTCTGACTTCTAAAATTGGCAGTGTTATCGGTAAAGGTGGCACCATCATATCAGAAATTCGTCAAGAAACTGGAGTAAAAGTTAAAGTTGAAGATACAATTCCTGGATGTGATGAGAGAGTTATCACTACTCTAGGTTCTGATAAAGATACTGAAGAATATATTGATCAGAGTAAGGAGGTTTGCAATCAAAATACAGATACTGATCGGAGCAAAGAGGTTTACAAGGAAAATGCAGATACTGATCGGAGCAACGAGGTCTGCAAGGAAAACACTGATAGCAATGGGAAGGGTGATAAGACAGAAGAACATCATCATAATAATGACAATAAAGATTCTATTCATGTTGAAGATTCACAATGTGAGAAGAGAACTTTCTCTGTTCAAAAAGCGCTATTACTTATTTTTGAGAGGATAGTTGAAGGAGAAGAGGGGACAACTGAAGGTGGTGATGAAAGTAAGAAgccttcttcttttgtttttaggtTACTTGTCTTCTCCAGTCAAATTGGCTGTGTCTTGGGAAAGAGCGGTAGTGTAATCAAGCAAATGTCAGCTGACAGTGGGGCGCAGATTCGGATTCTTCCTAGGGACAAACTTCCCCTCTGCGCATCATCTTCTGATGAGTTAGTTCAGATTACTGGGGGAGTTGATGCTGTCAGGAAAGCTCTTCAATCTGTTTCTCAGCAGCTTTTGGAAAATCCACCTCGGGATCAAGAATCTCTGTCTGTCAATCCAACAGGACCATCTTCTCATTCATTTGGTCAGTTCCAGCCACCCAACCGTTCCTTTACTGCTCATGGAGGACCTTACTGTGGGATCTCGTGCCATCCAAGGTCGACATCGGCCTTCACAGGAAATGCTAACTTTtcgtttattgtgtcaatTGGTAAGGGTGGAGCAATTATAAAGATTATTCAGCAAGAGACAGCAAGTGAAATCAATGTTATTGAAGGTATTTCTGATCCAGAAGATCGCATTGTTATCATATCTGGTCCAGCGCACCCAGATGATAGGATATCTCCTGTGCAAGATGTCGTACTTCGTGTGCAAACTAGAATAGTCAGGGCTAGTCCTGATGCTAAGGAGCATAGCATGTTAGCAAGGATTATTGTTTCTTCCAATCAAATAGGTTGTCTCCTTGGAAAGGGTGGTTCCGTCGTTGCTGAAATGAGAAAGCTATCTGGAGCATATATTCGTATATCAAGAAAGGATCAGGTTCCAAAGAGTGTTTCAGAAGACGAAGTAGTTCAGATAAGTGGAGACTTTAACGCTGTACAAGATGCTCTCTTGCAAATAACCACTAGACTAAGGCATCATTTCTTTCGTGATGCATATCCTTCTATAAATTATCCTTCAAATTCTGGATTTCTGGATCAAGTTCCTCCCTTCCCAATGTACATGAGGCGGGAATTCTCACCTCCAGGAATGTATGCTAAGCTAGGTCCCCCATTTCACAAGTTTGACGCTGTTGGTGCTCCACCTCCACATGGACATGGTCATTTTCCTCATGATGATCATCCTCCATTTATGCATAATGTGCACAGGCCAGGTGTTCCTCATCATGTATCTGAAAGGAAACCTTGGAGCCCTCAGGGGCTAATTGAAGGTGGTGGACCCGTGGGATATCCAGAGTTTGCTGGAGGGCCTCCTAGAAGAATTTCAGGATTTGTTGGAGGGAGTCATCAACCAATTATCACAAGCACAACAATTGAAGTAGTCGTTCCCCGTACTGCAGTGCCTGTAATATATGGAGAAGATGGCGAGTGCTTCAAACGAATACGGCagATCTTTGGAGAGTCCTTTATATGGTTGTTCATGAATTGCTTCAGTTATCttgatgattttgatgtttatACCATCTCTGATGCAAAAGTCACAATTACTGAGCCAAAGCCTGGAGCAGTGGAAACTACAATTATAATATCTGGCACTCCAGAGCAAACTCATGCTGCGCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTAGCTG 2153 0.418 MSVPLTPSKRPNDRGPVESNGKGKWQKLAGVHSSSQALKVSPGSVVFRLLCLTSKIGSVIGKGGTIISEIRQETGVKVKVEDTIPGCDERVITTLGSDKDTEEYIDQSKEVCNQNTDTDRSKEVYKENADTDRSNEVCKENTDSNGKGDKTEEHHHNNDNKDSIHVEDSQCEKRTFSVQKALLLIFERIVEGEEGTTEGGDESKKPSSFVFRLLVFSSQIGCVLGKSGSVIKQMSADSGAQIRILPRDKLPLCASSSDELVQITGGVDAVRKALQSVSQQLLENPPRDQESLSVNPTGPSSHSFGQFQPPNRSFTAHGGPYCGISCHPRSTSAFTGNANFSFIVSIGKGGAIIKIIQQETASEINVIEGISDPEDRIVIISGPAHPDDRISPVQDVVLRVQTRIVRASPDAKEHSMLARIIVSSNQIGCLLGKGGSVVAEMRKLSGAYIRISRKDQVPKSVSEDEVVQISGDFNAVQDALLQITTRLRHHFFRDAYPSINYPSNSGFLDQVPPFPMYMRREFSPPGMYAKLGPPFHKFDAVGAPPPHGHGHFPHDDHPPFMHNVHRPGVPHHVSERKPWSPQGLIEGGGPVGYPEFAGGPPRRISGFVGGSHQPIITSTTIEVVVPRTAVPVIYGEDGECFKRIRQIFGESFIWLFMNCFSYLDDFDVYTISDAKVTITEPKPGAVETTIIISGTPEQTHAAQSLIQAFVMSERESS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00138 717 CDD PCBP_like_KH 210 278 - -
Bva10g00138 717 ProSiteProfiles Type-1 KH domain profile. 44 112 - -
Bva10g00138 717 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 100 IPR036612 GO:0003723
Bva10g00138 717 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 552 - -
Bva10g00138 717 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 346 405 IPR036612 GO:0003723
Bva10g00138 717 MobiDBLite consensus disorder prediction 108 166 - -
Bva10g00138 717 ProSiteProfiles Type-1 KH domain profile. 346 397 - -
Bva10g00138 717 CDD PCBP_like_KH 46 97 - -
Bva10g00138 717 CDD PCBP_like_KH 419 484 - -
Bva10g00138 717 Gene3D K Homology domain, type 1 344 404 IPR036612 GO:0003723
Bva10g00138 717 Gene3D K Homology domain, type 1 616 715 IPR036612 GO:0003723
Bva10g00138 717 Gene3D K Homology domain, type 1 413 491 IPR036612 GO:0003723
Bva10g00138 717 Gene3D K Homology domain, type 1 206 286 IPR036612 GO:0003723
Bva10g00138 717 SMART kh_6 414 488 IPR004087 GO:0003676
Bva10g00138 717 SMART kh_6 336 402 IPR004087 GO:0003676
Bva10g00138 717 SMART kh_6 617 711 IPR004087 GO:0003676
Bva10g00138 717 SMART kh_6 43 183 IPR004087 GO:0003676
Bva10g00138 717 SMART kh_6 207 282 IPR004087 GO:0003676
Bva10g00138 717 MobiDBLite consensus disorder prediction 1 23 - -
Bva10g00138 717 CDD KH-I 620 707 - -
Bva10g00138 717 Gene3D K Homology domain, type 1 40 112 IPR036612 GO:0003723
Bva10g00138 717 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 413 496 IPR036612 GO:0003723
Bva10g00138 717 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 618 711 IPR036612 GO:0003723
Bva10g00138 717 ProSiteProfiles Type-1 KH domain profile. 618 706 - -
Bva10g00138 717 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 552 - -
Bva10g00138 717 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 200 285 IPR036612 GO:0003723
Bva10g00138 717 Pfam KH domain 419 483 IPR004088 GO:0003723
Bva10g00138 717 Pfam KH domain 346 384 IPR004088 GO:0003723
Bva10g00138 717 Pfam KH domain 211 277 IPR004088 GO:0003723
Bva10g00138 717 Pfam KH domain 48 102 IPR004088 GO:0003723
Bva10g00138 717 ProSiteProfiles Type-1 KH domain profile. 415 483 - -
Bva10g00138 717 MobiDBLite consensus disorder prediction 281 310 - -
Bva10g00138 717 ProSiteProfiles Type-1 KH domain profile. 208 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00138 Bva-Chr10 2975995 2981157 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00138 K21444 - qsu:112004419 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00138 10 2975995 2981157 Bva10g00138 10 2975995 2981157 ECH