Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00129 ATGTGCAATCCAAAGCCTTCTTCAGCATCCCCATTTCTATGTCCCACAAAAACCCATCTCTTAACTTCCCACAAAAGCATGGATCCTGATGATCAAGATAAACTTCACAGGTGGCCAACTCCTAATGAGGTCTTAGAAGAAATCAGAGCCATAGGGAAGATATCAGGCCCAACAGCCATCACTGGTTTACTCTTGTACTCGAGAGCTATGATCTCTATGCTTTTCCTGGGCTACCTTGGTGAGATGGAGCTCGCCGGAGGTTCTCTCTCTATTGGGTTTGCAAACATCATTGGCTACTCTGTAATCTCTGGATTAGCCATGGGAATGGAACCCATTTGTGGACAAGCTTATGGCGCAAAACAATGGAAGGTGCTTGGCTTGACCCTGCAAAGAACtgtgcttcttcttctctccacTTCCATACCCATCTCTTTTATGTGGCTTAACATGAAGAGAATCCTCTTATGGTGCGGTCAAGATGAGGAAATATCATCAATGGCACAGACTTTCATTACTTTTTCCATCCCAGACCTAATCTTCCTTTCACTCCTCCACCCTCTTCGAATCTACCTCAGGACACAGAACATCACATTACCATTAACATATTGTTCAGCCATCTCAGTTCTCCTCCATGTCCCTCTAAATTTCCTTCTAGTCGTTCAATTGAAGATGGGTATTTCTGGGGTAGCCATTGCAATGGTGTGGACTAATCTGAACCTCTTTCTCTtgctttcttcctttgttttcttctcggGTGTATATAAAGACTCATGGGTTACTCCTAGCATGGACTGCATCAGGGGATGGTCCTCTCTGCTTGCACTTGCCATTCCGACCTGCGTCTCGGTTTGCCTTGAGTGGTGGTGGTACGAGTTCATGATAATGCTATGTGGGCTACTAGTAAATCCCAAAGCCACCATTGCTTCAATGGGTATTCTTATCCAAACAACCTCTTTGGTCTATGTCTTCCCCTCATCTCTTAGCCTTGGAGTTTCCACAAGGGTGGGGAATGAATTAGGCGCCAAGAGACCAGGAAAAGCTCGCATTTCCATGATAGTTTCCCTCTTCTGTGCAGTGGCTTTGGGCCTCGCAGCTATGGTCTTCACCACCTTAATGAGACACCAGTGGGGACGATTCTTCACCTCCGACTCTGAAATTCTCAACCTCACAGCAATTGCATTGCCGATTGCAGGGCTTTGTGAGCTCGGAAACTGCCCACAGACCACTGGTTGTGGAGTTCTGAGAGGAAGCGCAAGACCCACCATTGGAGCAAATATCAATTTGGGTTCATTTTACTTGGTGGGTATGCCAGTGGCAATTCTCCTCGGTTTTGTCGCCAAAATGGGATTTGCAGGACTCTGGCTGGGGTTGCTTGCAGCCCAAGCCTCATGCGCGCTGCTCATGCTGTTTGTTCTCAGCAGAACAGATTGGAATATGCAAGCAGAAAGAGCAAGAGAGCTCACAAGGAGTTCAACCACTGCTGCTGCTCCTGCATTGCCCACATTCACAAAAACAGAGTCTAACAAGAATCCTCGTCTTGAACAGATAGTGATCGGCGAAGACGATAAGCTTAAGGAAACAGACCCTTTGATTATATCCTCTGCCAAACAACAGAGTGTCAATTA 1625 0.4517 MCNPKPSSASPFLCPTKTHLLTSHKSMDPDDQDKLHRWPTPNEVLEEIRAIGKISGPTAITGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANIIGYSVISGLAMGMEPICGQAYGAKQWKVLGLTLQRTVLLLLSTSIPISFMWLNMKRILLWCGQDEEISSMAQTFITFSIPDLIFLSLLHPLRIYLRTQNITLPLTYCSAISVLLHVPLNFLLVVQLKMGISGVAIAMVWTNLNLFLLLSSFVFFSGVYKDSWVTPSMDCIRGWSSLLALAIPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGAKRPGKARISMIVSLFCAVALGLAAMVFTTLMRHQWGRFFTSDSEILNLTAIALPIAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILLGFVAKMGFAGLWLGLLAAQASCALLMLFVLSRTDWNMQAERARELTRSSTTAAAPALPTFTKTESNKNPRLEQIVIGEDDKLKETDPLIISSAKQQSVN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00129 541 TIGRFAM matE: MATE efflux family protein 63 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva10g00129 541 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Bva10g00129 541 PANTHER PROTEIN DETOXIFICATION 27 501 - -
Bva10g00129 541 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva10g00129 541 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva10g00129 541 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00129 Bva-Chr10 2904482 2906796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00129 K03327 - qsu:111988266 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00129 10 2904482 2906796 Bva10g00129 10 2904482 2906796 ECH