Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00978 ATGGAAATATCAAATGATTCAGGTATTAAGAAACCAAAGAGGTTGACATCTGTTGTCTGGGAACACTTTGAAAGGGTCAGGAAGGCTGACACCTGTTATGCTGTTTGCCGTCACTGTGGCAAGAAACTTAGTGGTTCAAGTAACAGTGGAACAACGCATCTGAGAAATCACTTGATGCGATGTCTGAAAAGAACAAACCATGATGTGTCTCAACTACTTGCAgcaaagagaaggaaaaaagataataatgtCAACCTGGGAAATATTACTTTTGATGGCCAGAGGAAGGAAGAATATATGAAGCCAGCAATTATCAAGTTTGAACCGGAGCATAAGAGAGATGAAATTATTAACTATGGGAGTAGTAAATTTGATCAGGAGCGGAGTCAAATTGATCTTGCACGCATGATCATAATGCATGGATATCCATTGGCCATGGTTGAACATGTCGGATTCAGAGTCTTTGTGAAGAATCTCCAGcctctctttgattttgtGCCTAATAGTAGTTTAGAATTTTCGTGTATCGAAATCTATGGGAAGGAGAAAGCAAAAGTGTATGACATGATAAACAAACTACATGGCAGAATCAATGTGTCTGCTGAAATGTGGTTTTCATCAGAAAATTCTCAGTTTTTGTGTTTAGCTGTCCATTATATTGATGAGGACTGGACATTACAGAAGAAGATTCTGAACTTTGTCACGCTTGATTCTACTCACACTGAAGACATGCTTCCAGAAGTCATCATCAGATGTTTGAGTGAATGGGATATCGACTGTAAGCTGTTTGCCTTAACTCTTGATGATTGCTCCATTGATGATGACATTACTCTCAGAATCAAAGAGCAAATTTCTGAGAAGAGACAATATTCAAGTAATTGTCAATTACTTGACATACGTTCTGCTGCACATGTCCTAAGTTTTATCGTTCAAGATGCGCTGGATGCACTACGTGAGGTGATCCAAAAGATTCGAGAAAGCATAAGATACATTAGAAGTTCACAAGTAATACAAGGAAAGTTTAATGAGATTGCTCAACATGCTGGAATTAACTCTAAGAATGCCTTGGTTCTTGATTGTCCATCTCGATGGAACTCAACATATGGCATGCTTGAAACTGCACTAGAATACAAGAACGCTTTCTCTATCTATCAAGAGGATGATCCCTCCTATTCGTCATCTCTAACTGATGAAGAGTGGGAATGGGTAAGTTCAGTTACCAGCTACTTAAAACTTACAGTCGAAATCACCAAcgtctttaaaaaaaacagattTGCTACTGCAAATATATGCTTTCCTGAGATATGTGATGTTCACCTCCAGTTAATTGACTGGTGCAGAAGTCCAGATCCCTTTCTTAGTTCCTTGGCTTTGAAGATGAAAGCCAGGTTTGATAAATACTGGAACAAATGCAGTTTGGCTTTAGCAGTAGCAGCAATCTTAGATCCCCGGTTTAAGATGAAGTTGGTGGAATACTACTATTCCAAAATTTATGGAAGCCCAGCTGTTCATCGTATCAAGGAAGTTTCCGATGGTATCAAAGAACTTTTCAATGCATACTCTATTATGGTTGATCAAGGATCAGCCTTACCTGGCAGCAGCTTACCTGGTACATGTAGTGATAGTAGGGACAGACTGAAGGGCTTTGATAAATTCCTCCATGAGAGCTCACAGGGTCCCAGCACAACATCAGACTTGGACAAGTACTTAGAGGAACCAATCTTTCCTCGTGGAAATGATTTCAACATATTGAACTGGTGGAAAGTTCACATGCCGAGGTACCCGGTCTTGTCTATGATGGCACGTGATGTTCTTGGGACTCCCATGTCAACTGTGGCACAAGAGTTGGCATTTAGCACTGGAGTTAGAGTGCTAGATCCTTCTCGTAGTTCACTAAACCCTGATACACGACAAGCTGTAATATGCACACAAGATTGGCTTCTCAATGAATCAAGAGATTTGAATCCATCCTCGAGCCATTCTGCTCTACCCCTTCTCATTGAATCAAGTTA 2012 0.3907 MEISNDSGIKKPKRLTSVVWEHFERVRKADTCYAVCRHCGKKLSGSSNSGTTHLRNHLMRCLKRTNHDVSQLLAAKRRKKDNNVNLGNITFDGQRKEEYMKPAIIKFEPEHKRDEIINYGSSKFDQERSQIDLARMIIMHGYPLAMVEHVGFRVFVKNLQPLFDFVPNSSLEFSCIEIYGKEKAKVYDMINKLHGRINVSAEMWFSSENSQFLCLAVHYIDEDWTLQKKILNFVTLDSTHTEDMLPEVIIRCLSEWDIDCKLFALTLDDCSIDDDITLRIKEQISEKRQYSSNCQLLDIRSAAHVLSFIVQDALDALREVIQKIRESIRYIRSSQVIQGKFNEIAQHAGINSKNALVLDCPSRWNSTYGMLETALEYKNAFSIYQEDDPSYSSSLTDEEWEWVSSVTSYLKLTVEITNVFKKNRFATANICFPEICDVHLQLIDWCRSPDPFLSSLALKMKARFDKYWNKCSLALAVAAILDPRFKMKLVEYYYSKIYGSPAVHRIKEVSDGIKELFNAYSIMVDQGSALPGSSLPGTCSDSRDRLKGFDKFLHESSQGPSTTSDLDKYLEEPIFPRGNDFNILNWWKVHMPRYPVLSMMARDVLGTPMSTVAQELAFSTGVRVLDPSRSSLNPDTRQAVICTQDWLLNESRDLNPSSSHSALPLLIESS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00978 670 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 4 649 - -
Bva09g00978 670 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Bva09g00978 670 Pfam hAT family C-terminal dimerisation region 565 647 IPR008906 GO:0046983
Bva09g00978 670 PANTHER BED FINGER-RELATED 4 649 IPR045259 -
Bva09g00978 670 SMART bed5 14 64 - -
Bva09g00978 670 SUPERFAMILY Ribonuclease H-like 194 647 IPR012337 -
Bva09g00978 670 Pfam Domain of unknown function (DUF4413) 423 520 IPR025525 GO:0003677
Bva09g00978 670 Pfam BED zinc finger 17 67 IPR003656 GO:0003677
Bva09g00978 670 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00978 Bva-Chr9 5025743 5028914 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00978 - - gmx:106794558 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00978 09 5025743 5028914 Bva09g00978 09 5025743 5028914 ECH