Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00888 ATGGCAGCTGTTTCATGCTCCTGGCTCACCTTTCCCTCCAGGATGCGAAGTCTTTCCCTCACTTCCTCTGCTTCGCCCTCTAGTTCCACATCAAATTCAGGGTCTCTCAGCTTTTCCAGAAACCTTTCTCACAATGTCTTCTCACAAGGTTGCTCGTCGTTCAGCTCGGTAAATAGGCCAATTCGACATTTCGTGGTTTGCGAGGCAGCTCCTAAAGGAAAGGCTGATTCCGCAGCGAAGAGAGCTCGCCAGGCCGAGAAGCGGCGAATTTACAATAAAGCTGGGAAATCCGAGATAAGAACCCGTATGAGGAAGGTTTTGGAAGCGTTGGATGCACTTAGGAAGAAATCCGATGCCCAATTCGAAGAAATCGTCTCCATTGAGAAACTTATCGGAGAGGCATACTCAGCAATCGACAAAGCAGTGAAAGTAGGCACATTGCACAGGAACACTGGAGCAAATCGCAAGTCTCGGCTTGCCAGAAGAAAGAAGGCTGTGGAGATTCATCATGGCTGGTCTCTCAGCTTCTCCGCTGACTTCTCCTATGGCGTCCTCTCCAAAGGTTGCTTGTCAATGGAGATTTTTGGCGGGCCAATTCGTCATCCCGTTGTTTGTATGGCAAAGAGATATGCCCCCAACACTTTGAAGAGAAAGAGGTTGAGTAGAAAAAGGGGAGGTGACCCTGGGAAGAAGGTACACAGGAGGAGGAAGGGGTCAAGAAGGAAGAAGCTTTTTAAGATCATCAGGCTTGTCTCAGTAGCTGGGACTGGATTCTCTTATGCCAAGAAAAAAAGCAGGAAGCTTGACAAGATTGAGGTGAAGAAATATGATCCACAGGTAAAGCGCCATGTTTTGTTCACTGAAACAAAATG 872 0.4782 MAAVSCSWLTFPSRMRSLSLTSSASPSSSTSNSGSLSFSRNLSHNVFSQGCSSFSSVNRPIRHFVVCEAAPKGKADSAAKRARQAEKRRIYNKAGKSEIRTRMRKVLEALDALRKKSDAQFEEIVSIEKLIGEAYSAIDKAVKVGTLHRNTGANRKSRLARRKKAVEIHHGWSLSFSADFSYGVLSKGCLSMEIFGGPIRHPVVCMAKRYAPNTLKRKRLSRKRGGDPGKKVHRRRKGSRRKKLFKIIRLVSVAGTGFSYAKKKSRKLDKIEVKKYDPQVKRHVLFTETK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00888 290 TIGRFAM rpmG_bact: ribosomal protein bL33 241 290 IPR001705 GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 MobiDBLite consensus disorder prediction 217 238 - -
Bva09g00888 290 Pfam Ribosomal protein L33 247 290 IPR001705 GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 Coils Coil 96 116 - -
Bva09g00888 290 SUPERFAMILY Ribosomal protein S20 76 173 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 TIGRFAM S20: ribosomal protein bS20 75 161 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 PANTHER 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC 1 172 - -
Bva09g00888 290 Gene3D Ribosomal protein S20 75 180 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 Hamap 30S ribosomal protein S20 [rpsT]. 69 165 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 Gene3D Ribosomal protein L33 239 290 IPR038584 -
Bva09g00888 290 Pfam Ribosomal protein S20 76 162 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 PANTHER 30S RIBOSOMAL PROTEIN S20 1 172 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva09g00888 290 SUPERFAMILY Zn-binding ribosomal proteins 242 290 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00888 Bva-Chr9 4577476 4580806 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00888 K02968 - rcu:8289732 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00888 09 4577476 4580806 Bva09g00888 09 4577476 4580806 ECH