Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva09g00840 | ATGGGAGATCGTTTTAGGCCTTTTTCCATTGAGGAATTGCCGTCACAtcttattttagaaattcTGAGCTCGGGCAGGCTCAGTGCAGTTGATCTTGTTTGTTTAGAGTTGACATCCAAGACTTTTGGTGGGAATCACGGTTTATACCCTTACAAGTTTCGGTCATTGGTCGACTTTGCCGCATTTCAGCTTTGTATCTCTCATCTTATCTATTCTAGAATGAGTTTAGATGCTCAGAGGGAGTTGAATGATCGATGTGGTGGCAACTGGAAGCGGGTTTTGAGGTTCTTACAATCTGTGGAACAATCCTCTGAGATGGTGGAGACGTCAGCAGGCAATaTGCAAATAACAACCGGAAAGTATCACACCTTTTTGATCAGCAACTCATCTGTCTACTCCTGTGGTTCTGGTTTGTGTGGTGTTCTTGGTCATGGGCCTGATACAACGCAGTGTGTAGCTCTGACTCGGATTATGCTGCCTCCTTTGGCACGTGTAATTCATGTTTCAGCCTCTCATAATCATGCAGCTTTTGTCATGCAATCTGGAGAGGTATTCACTTGTGGAGATAATTCATCGTCTTGCTGTGGGCATAAAGATACAAACCGACCAATTTCTAGGCCACGGCTTGTTGAGGCACTGAAGGGGGTTCCTTGCAAGCAGGTTGCAGCAGGGCTTAACTATACAATCTTTCTCACAAGACAAGGCCGTGTTTACACATGTGGAAGCAACACATATGGCCAACTTGGTCATGGTGATAGTCAGGACAGACCGACTCCAAAGATTATTGAAATGCTTGATGGAGTTGTCTCTGTTGTCCAGATTGCTGCTGGACCAAGCTACGTCCTGGCTGTTATGGAAAATGGACTTGTCTATTCTTTCGGATCAGGTGCTAATTTCTGTCTTGGCCATGGAGAGCAGCACAATGAGTTTCAACCACGTGCCATACAGACATTTCGAAGAAAAGGTATTCATGTAGTTCGTGTTTCAGCTGGTGATGAGCATGCAGTGGCACTTGATTCAAAAGGATTTGTATACACATGGGGCAAAGGCTACTGCGGTGCCTTAGGTCATGGAGATGAGATAGACAAGACAACTCCAGAGATCTTGTCCTGTCTCAAGCGCCCCTTGGCTGTGCAGGTCTGTgcaagaaagaggaaaacttTTGTTCTGGTTGATTCTGGTTCAGTTTATGGATTTGGGTGGATGGGATTTGGAAGCCTGGGGTTTCTGGACAGAGGAGTATCAGATAAAGTGATGAAACCTCGAGTTCTAGATAGCTTGAGAGCTCACCATGTTTCTCAAATTAGCACTGGGCTGTACCACACTGTTGTAGTCACTAACCGAGGACACGTCTTAGGTTTCGGAGACAACGAAAGAGCGCAGCTTGGACATGACACCTTAAGAGGATGCCTCATGCCAACTGAAATTTTCGTTAAGGATACAGCTGATGATGTTACTGATCCTATTTTACAAACCAGCTG | 1481 | 0.445 | MGDRFRPFSIEELPSHLILEILSSGRLSAVDLVCLELTSKTFGGNHGLYPYKFRSLVDFAAFQLCISHLIYSRMSLDAQRELNDRCGGNWKRVLRFLQSVEQSSEMVETSAGNMQITTGKYHTFLISNSSVYSCGSGLCGVLGHGPDTTQCVALTRIMLPPLARVIHVSASHNHAAFVMQSGEVFTCGDNSSSCCGHKDTNRPISRPRLVEALKGVPCKQVAAGLNYTIFLTRQGRVYTCGSNTYGQLGHGDSQDRPTPKIIEMLDGVVSVVQIAAGPSYVLAVMENGLVYSFGSGANFCLGHGEQHNEFQPRAIQTFRRKGIHVVRVSAGDEHAVALDSKGFVYTWGKGYCGALGHGDEIDKTTPEILSCLKRPLAVQVCARKRKTFVLVDSGSVYGFGWMGFGSLGFLDRGVSDKVMKPRVLDSLRAHHVSQISTGLYHTVVVTNRGHVLGFGDNERAQLGHDTLRGCLMPTEIFVKDTADDVTDPILQTS | 493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva09g00840 | 493 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 342 | 393 | IPR000408 | - | |
| Bva09g00840 | 493 | Gene3D | - | 79 | 293 | IPR009091 | - | |
| Bva09g00840 | 493 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 394 | 448 | IPR000408 | - | |
| Bva09g00840 | 493 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 288 | 341 | IPR000408 | - | |
| Bva09g00840 | 493 | SUPERFAMILY | RCC1/BLIP-II | 111 | 409 | IPR009091 | - | |
| Bva09g00840 | 493 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 234 | IPR000408 | - | |
| Bva09g00840 | 493 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 435 | 445 | IPR000408 | - | |
| Bva09g00840 | 493 | PANTHER | BNAA01G28890D PROTEIN | 9 | 478 | - | - | |
| Bva09g00840 | 493 | PRINTS | Chromosome condensation regulator RCC1 signature | 435 | 451 | IPR000408 | - | |
| Bva09g00840 | 493 | PRINTS | Chromosome condensation regulator RCC1 signature | 289 | 305 | IPR000408 | - | |
| Bva09g00840 | 493 | PRINTS | Chromosome condensation regulator RCC1 signature | 325 | 338 | IPR000408 | - | |
| Bva09g00840 | 493 | PRINTS | Chromosome condensation regulator RCC1 signature | 344 | 360 | IPR000408 | - | |
| Bva09g00840 | 493 | PRINTS | Chromosome condensation regulator RCC1 signature | 451 | 465 | IPR000408 | - | |
| Bva09g00840 | 493 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 328 | 338 | IPR000408 | - | |
| Bva09g00840 | 493 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 432 | 460 | - | - | |
| Bva09g00840 | 493 | Gene3D | - | 294 | 488 | IPR009091 | - | |
| Bva09g00840 | 493 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 287 | IPR000408 | - | |
| Bva09g00840 | 493 | SUPERFAMILY | RCC1/BLIP-II | 378 | 476 | IPR009091 | - | |
| Bva09g00840 | 493 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 235 | 284 | IPR000408 | - | |
| Bva09g00840 | 493 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 342 | 382 | IPR000408 | - | |
| Bva09g00840 | 493 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 181 | 231 | IPR000408 | - | |
| Bva09g00840 | 493 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 287 | 338 | IPR000408 | - | |
| Bva09g00840 | 493 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 9 | 478 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva09g00840 | Bva-Chr9 | 4344346 | 4348223 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva09g00840 | - | - | gmx:100786672 | 844.343 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva09g00840 | 09 | 4344346 | 4348223 | Bva09g00840 | 09 | 4344346 | 4348223 | ECH |