Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00561 ATGGCGACAGTTACTTATCTGTCGTTCTCAGCATTAAGTCAATGTTCTGAAAGAAAAGCAACTGCATCTTCAACTCGTTTCCTCGGATCAAATTCCGACGCCTTTCGATTGCGGTCGAATTTCTCTAATCATTATGTAGGCGTTCGAGCTTCCAATTCGGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTGACTGACATTCCACCCGCGGTTTCTGAGACAAAGGCAAATTTTCTTAAGGCATATAAGCGTCCAATCCCCAGTATCTACAACAATGTGCTTCAGGAGCTCCTTGTCCAGCACCATTTAATGAGATACAAGAGATCACACCGCTATGACCCTATATTTGGCCTCGGCTTTGTTACTGTATATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGATCGAGAGGTCATCTTTCAAGCTTATATAAAGGCATTGGAGGAAGATCCAAACCAATACAGAGTTGATGCACAGAAGTTGGAAGAGTGGGCTCGGGCTCAGAATCCAACTTCCTTGGTTGAGTTTTCATCcagagaaggagaaattgaGGGTATCTTGAAGGATATTGCAGAAAGGGCAGGGGGAAAGGGGGATTTCAGTTATAGCCGGTTCTTTGCAGTTGGCCTCTTTCGTCTACTTGAGTTGGCAAATGCAACAGAACCATCAGTGTTGGAAAAGCTATGTGCAGCTTTAAACATCAATAAGAGAAGTGTTGATCGAGACCTAGATGTATATCGTAATCTGCTTTCCAAGCTGGTTCAGGCAAAAGAGCTGCTAAAAGAATATGTTGACAGggagaagaagaaaagagaagaaaggtCTGATTCACAAAAGGCTAATGAAGCCATTACAAAATGCTTGGGACAATACCAATATTCTGGCCTGTA 896 0.4074 MATVTYLSFSALSQCSERKATASSTRFLGSNSDAFRLRSNFSNHYVGVRASNSASKMVIQCMSSVTDIPPAVSETKANFLKAYKRPIPSIYNNVLQELLVQHHLMRYKRSHRYDPIFGLGFVTVYDQLMEGYPSDEDREVIFQAYIKALEEDPNQYRVDAQKLEEWARAQNPTSLVEFSSREGEIEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANATEPSVLEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSDSQKANEAITKCLGQYQYSGL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00561 298 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 287 - -
Bva09g00561 298 Pfam Thylakoid formation protein 72 276 IPR017499 GO:0010207|GO:0015979
Bva09g00561 298 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 71 273 IPR017499 GO:0010207|GO:0015979
Bva09g00561 298 Coils Coil 248 275 - -
Bva09g00561 298 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 287 IPR017499 GO:0010207|GO:0015979
Bva09g00561 298 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00561 Bva-Chr9 3000039 3003567 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00561 - - gmx:100814341 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00561 09 3000039 3003567 Bva07g02078 07 17755455 17758891 BWGD
Bva09g00561 09 3000039 3003567 Bva09g00561 09 3000039 3003567 ECH