Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00138 ATGGGTCAGGGACTCAGTTGCAGAGGCAGCCATGAACATGGCCTCTTCACTGCCGTGCAGCATGGAGATCTCCAAACTCTGCAAACTCTGTTCGAAAGAGACCCAACTGTCGTGCACCACACCACTGCCTACGATCGCCACTCTGCCCTTCATATAGCTGCTGCTAATGGCCAGATCGAGATTTTATCTATGCTTTTAGATGGATCTATGAATCCAGATGTTTTGAATCGTCAAAAGCAGACTCCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTCGAAGCTGGAGCTAATGTATTGATGTTTGATACACTTTATGGAAGAACCTGTTTGCATTATGCTGCCTATTATGGTCATTCTGCATGCCTTAAAGCCATTCTTTCTGCTGCTCAATCCAGTCCAGTGGCTGCATCTTGGGGATTTGCTCGGTTTGTGAATGTTAGAGATGCCAGGGGAGCAACACCGTTGCACTTGGCGGCCCGTCAAAGACGGCCTGAATGTGTGCATTTTCTATTAGACCATGGAGCTCTTGTTTGTGCTTCAACAGGTGGATATGGCTATCCTGGGAGCACTCCACTTCATCTTGCAGCCAGAGGGGGATCTATGGATTGCGTCCGTGAACTGTTGGCATGGGGTGCAGATCGTCTTCAACGTGACGCAACAGGGCGGATACCATATGTAGTTGCTCTGAAACACAAGCACGGAGCGTGTGCAAGATTGCTAAATCCTACATCTGCAGAGCCTCTTGTCTGGCCATCACCTTTGAAGTTTATAAGTGAGCTTAATCCGGAGGCAAAAGATCTATTAGAACGGGCATTGATGGATGCTAAcagggagaaggagaaaaacatATTGAAGGGAAGCGTTTACTCTCTTCCATCTCCATCACATTCTGATAGTGGGATAGATGATAGTATCTCTGAGGGGAGTAACCCAGAATTATGTTGCATCTGCTTTGAGCAAGTGTGCACAATTGAAATCCAGGAATGTGGGCACCAGATGTGTGCACAATGCACGCTGGCTCTCTGTTGCCACAACAAGCCTAACCCCGCTACAGCTTGTCTAACGCCAccagtttgtccattttgccGAAGTAGCATAGCTAGACTGGTGGTTGTGAAGATGGAAAGTTATGATGACACCGATCGAGATGTGGGAGATAATAATTCTTCCAAGCTAAGCAAGCCGAGGAAATCTCGAAATTTGAACGAGGGCGGCAGCAGTAGCTTCAAGGGATTATCTTCATTTGGAAAGATTGGTGGCCGCGGCTCTGGAAGGATTGCTGCGGAAAATGAGTGGGTTGATAAACAGTG 1331 0.4636 MGQGLSCRGSHEHGLFTAVQHGDLQTLQTLFERDPTVVHHTTAYDRHSALHIAAANGQIEILSMLLDGSMNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDTLYGRTCLHYAAYYGHSACLKAILSAAQSSPVAASWGFARFVNVRDARGATPLHLAARQRRPECVHFLLDHGALVCASTGGYGYPGSTPLHLAARGGSMDCVRELLAWGADRLQRDATGRIPYVVALKHKHGACARLLNPTSAEPLVWPSPLKFISELNPEAKDLLERALMDANREKEKNILKGSVYSLPSPSHSDSGIDDSISEGSNPELCCICFEQVCTIEIQECGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSSIARLVVVKMESYDDTDRDVGDNNSSKLSKPRKSRNLNEGGSSSFKGLSSFGKIGGRGSGRIAAENEWVDKQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00138 443 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Bva09g00138 443 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Bva09g00138 443 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Bva09g00138 443 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Bva09g00138 443 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Bva09g00138 443 SUPERFAMILY RING/U-box 320 375 - -
Bva09g00138 443 MobiDBLite consensus disorder prediction 406 420 - -
Bva09g00138 443 MobiDBLite consensus disorder prediction 386 405 - -
Bva09g00138 443 Gene3D - 9 143 IPR036770 -
Bva09g00138 443 SMART ANK_2a 10 39 IPR002110 GO:0005515
Bva09g00138 443 SMART ANK_2a 194 223 IPR002110 GO:0005515
Bva09g00138 443 SMART ANK_2a 112 142 IPR002110 GO:0005515
Bva09g00138 443 SMART ANK_2a 78 107 IPR002110 GO:0005515
Bva09g00138 443 SMART ANK_2a 45 74 IPR002110 GO:0005515
Bva09g00138 443 SMART ANK_2a 157 186 IPR002110 GO:0005515
Bva09g00138 443 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Bva09g00138 443 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Bva09g00138 443 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Bva09g00138 443 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Bva09g00138 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Bva09g00138 443 Pfam Ankyrin repeats (many copies) 160 215 IPR002110 GO:0005515
Bva09g00138 443 Gene3D - 144 292 IPR036770 -
Bva09g00138 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
Bva09g00138 443 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Bva09g00138 443 Pfam Ankyrin repeat 112 134 IPR002110 GO:0005515
Bva09g00138 443 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Bva09g00138 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 385 IPR013083 -
Bva09g00138 443 MobiDBLite consensus disorder prediction 386 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00138 Bva-Chr9 644568 647256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00138 32 247 Miscellaneous Gene Families AT5G02620 29.018 1.57e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00138 - - mnt:21407924 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00138 09 644568 647256 Bva07g02504 07 20058239 20061243 BWGD
Bva09g00138 09 644568 647256 Bva09g00138 09 644568 647256 ECH