Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00113 atgttgtcTGAATTGGGAAGAAGACCGATGCTTGGAGGTAACGAGGGCTCTTATGGAGATGATTTGGAGAAAGAGATAGGGATGTTACTTCGCGAGCAACGTCGACAGGAGGCTGATGATCGCGAGCGCGAGCTCAATTTGTATAGAAGTGGATCAGCGCCTCCTACTGTCGAGGGTTCTTTAAGTGCAGTTGGAGGGTTATTAGGTGGCGCCACTGGTACTTCCTTTTCTGAGTTTCCTGTGAGTAAAAATGGAAATGGGTTTGCGTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATATTTCCTACTATTACTCGAATGTGAATTTGAATCCTCGACTTCCACCTCCATTACTATCAAAGGAGGATTGGAGGTTTGCACAAAGATTAAAAGGTGGGGCTTCGGTGCTGGGTGGAATTGGCGATAGGAGAAAAGTTAATAGGGCTGATGATAATGCTGGTAGATCATTGTTTCCAACTCCACCCGGTTTTAGCATGAGGAAACAAGAGAGTGAGGCGGATAATGAGAAAATACGGGCTTCACCTGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGTCTAGGACTTGGGAGCAAACAAAAGAGCCTTGCAGAAATTTTTCAGGATGATTTAGGGCGTACCACACCTGTCACGGGCCTTCCTTCTCGACCAGCCAGTCGTAATGCTTTTGACGAAAGTGTTGATATCGTAAGTTCTGCTGAAGCAGAGTTGGCTCATCTACGCCATAATTCTGCAACTGCTGATGCTTTAAGATCAGGATCAAATGTTCAGGGCTCATCTGCAGCCCAAAATATTGGCCCACCAACTTCCTATACTTATGCTGCTGCTTTAGGATCTTCCTCGTCAAGAAGTAACACTCCTGATCCGCAAATTGTTGTTAGGGCTCCTAGTCCTTGTCTTACACCTATTGGGGGAGGGAGAGTTGTCGCCTCTGAGAAGAGAGGTATTACCAGTCCAGATGCATTTAATGGTGCTTCATCTGGCATCAGTGAGTCTGCAGATCTGGTAGCTGCATTGTCTGGCATGAACTTGTCAGCAGATGGTGTGATAGATGGTGACAACCACTTGTCATCACAGGTTGAGTCAGATGTTGATAGTCACCAGAGATATCTATTTGGTATGCAAGGTGGTCAGGATCATGGCAAGCAACATGCATATTTAAAGAAGTCTGAATCAAGGCACTTGCAAAAAACACCTTACACAGATTCAGGTAAAAGTGGCGGGAGTGGGTCAGAAATCAACAACTCTTCCTTGGATAGGCAAGTTGAATTACAAAAGTCTACTATTCCTTCTGGTAACTCATACTACAACGGATCCCCTACCTCTCCTTTTAGTGGCGGAGGTAGTTTGCCAACTCAGTATCAGCCTTTAGATGGTATGAATTCATCATTCACTAACTATAGCTTGAGCGGGTATCCTGGAAATTCACCAGTGGTATCCTTAATGGCCAACCAACTTGGCACTGGCAATATGCCACCCCTGTTTGAAAACGTTGCTGCTGCATCAGCAATGGGACCTGGAATGGACTCGAGAGTTCTTGGAGGCGGCTTGCCTTCTGGAGCTGCTCCATCTGATGCACATGGTCTTGGTAGAATGGGAAATCAAATTGGAGGTGGTACTCTTCAAGCGCCTTTTGTTGATCCAGTGTATCTTCAGTACTTGAGGACATCGGAGTATGCTGCTCAACTTGCTGCTCTTAATGACCCTTCTGCGGACAGAAACTTCTTGGGCAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGGCACTGATCTCACCTCAGAAGGCACAGTTCAATGTTCCACTGGGTGGTAAGTCAGGGGGCTCCAATCATCATGGTTATTATGCAAATCCTGCATATGGTGTTGGCTTGTCTTACCCTGGAAGTCCAATGGCAAACTCTGTTTTATCCAGTTCTCCAGTTGGGTCTGGCAGTCCTATTAGGCACAATGAACTGAACATGCGTTTTGCTTCTGGGATGAGGAATTTAGCTGGTGGCGTCGTGGGGCCTTGGCACCTAGATGCTGGGTGCAACATGGATGAAAGCTTTGCTTCTTCTCTATTGGAAGAGTTTAAAAGCAATAAAACCAAGTGTTTTGAACTCTCAGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAGTCAGCAActacagaagaaaaaaatatggttTATCAGGAAATCATGCCACAAGCTCTTGCTCTAATGACTGATGTCTTTGGTAATTATGTTGTTCAAAAGTTTTTTGAGCATGGACTTGCTTCTCAGAGAAGAGAATTAGCCAACAACCTTTTTGGTCATGTTCTCACTCTTAGCCTTCAAATGTATGGTTGTCGGGTGATCCAGAAGGCTATAGAAGTTGTTGATCTAgaccagaaaataaaaatggtacAAGAGCTTGATGGTCATGTCATGCGCTGTGTACGTGATCAGAATGGTAACCATGTCGTTCAGAAGTGTATTGAATGCGTCCCTGAAGATGCAATCCACTTTATTGTCTCAACATTTTTTGATCAAGTCGTGACACTTTCAACACATCCATATGGTTGCCGGGTGATACAGAGAGTACTAGAGCACTGTAAAGACCCTAAAACACAGCAAAAAGTTATGGATGAGATTTTAGGAGCTGTTAGCATGTTAGCTCAAGATCAGTATGGCAACTACGTTGTGCAGCATGTGCTTGAACATGGGAAGCCTCATGAGCGTTCGGATATTATAAAGGAATTAGCAGGCAAAATAGTCCAAATGAGCCAACAGAAGTTTGCTTCCAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTGATGAACGCCAGTTACTAGTGAATGAGATGCTTGGGTCCACAGATGAAAATGAGCCTCTGCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTACAAAAGGTGCTGGAAACATGTGATGACCAACAACGTGAGCTGATTCTTTCACGAATTAAGGTTCATTTGAATGCTTTGAAAAAGTACACTTATGGAAAACATATTGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAgtctccccatccccatcctgCTTA 3158 0.4332 MLSELGRRPMLGGNEGSYGDDLEKEIGMLLREQRRQEADDRERELNLYRSGSAPPTVEGSLSAVGGLLGGATGTSFSEFPVSKNGNGFASEEELRSDPAYISYYYSNVNLNPRLPPPLLSKEDWRFAQRLKGGASVLGGIGDRRKVNRADDNAGRSLFPTPPGFSMRKQESEADNEKIRASPEWGGDGLIGLPGLGLGSKQKSLAEIFQDDLGRTTPVTGLPSRPASRNAFDESVDIVSSAEAELAHLRHNSATADALRSGSNVQGSSAAQNIGPPTSYTYAAALGSSSSRSNTPDPQIVVRAPSPCLTPIGGGRVVASEKRGITSPDAFNGASSGISESADLVAALSGMNLSADGVIDGDNHLSSQVESDVDSHQRYLFGMQGGQDHGKQHAYLKKSESRHLQKTPYTDSGKSGGSGSEINNSSLDRQVELQKSTIPSGNSYYNGSPTSPFSGGGSLPTQYQPLDGMNSSFTNYSLSGYPGNSPVVSLMANQLGTGNMPPLFENVAAASAMGPGMDSRVLGGGLPSGAAPSDAHGLGRMGNQIGGGTLQAPFVDPVYLQYLRTSEYAAQLAALNDPSADRNFLGNSYMNLLELQKAYLGALISPQKAQFNVPLGGKSGGSNHHGYYANPAYGVGLSYPGSPMANSVLSSSPVGSGSPIRHNELNMRFASGMRNLAGGVVGPWHLDAGCNMDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLESATTEEKNMVYQEIMPQALALMTDVFGNYVVQKFFEHGLASQRRELANNLFGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGHVMRCVRDQNGNHVVQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPKTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSDIIKELAGKIVQMSQQKFASNVVEKCLTFGGPDERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHPHPA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 751 786 IPR001313 GO:0003723
Bva09g00113 1052 MobiDBLite consensus disorder prediction 390 406 - -
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 859 895 IPR001313 GO:0003723
Bva09g00113 1052 CDD Pumilio 711 1031 IPR033712 GO:0003723
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 787 822 IPR001313 GO:0003723
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 715 750 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 751 786 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 974 1009 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 932 967 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 859 895 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 787 822 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 823 858 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 715 750 IPR001313 GO:0003723
Bva09g00113 1052 SMART pum_5 896 931 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Nucleic acid binding protein NABP 302 714 IPR012940 -
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 823 858 IPR001313 GO:0003723
Bva09g00113 1052 Gene3D - 695 1041 IPR011989 -
Bva09g00113 1052 MobiDBLite consensus disorder prediction 381 424 - -
Bva09g00113 1052 MobiDBLite consensus disorder prediction 437 465 - -
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 932 967 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 791 824 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 937 970 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 719 753 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 902 933 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 756 786 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 863 898 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 833 857 IPR001313 GO:0003723
Bva09g00113 1052 Pfam Pumilio-family RNA binding repeat 982 1011 IPR001313 GO:0003723
Bva09g00113 1052 MobiDBLite consensus disorder prediction 407 424 - -
Bva09g00113 1052 MobiDBLite consensus disorder prediction 1 56 - -
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 896 931 IPR001313 GO:0003723
Bva09g00113 1052 SUPERFAMILY ARM repeat 698 1032 IPR016024 -
Bva09g00113 1052 MobiDBLite consensus disorder prediction 150 171 - -
Bva09g00113 1052 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1043 - -
Bva09g00113 1052 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 695 1035 IPR033133 GO:0003723
Bva09g00113 1052 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1043 - -
Bva09g00113 1052 MobiDBLite consensus disorder prediction 18 47 - -
Bva09g00113 1052 ProSiteProfiles Pumilio RNA-binding repeat profile. 968 1009 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00113 Bva-Chr9 520613 526825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00113 K17943 - gmx:100818836 1705.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00113 09 520613 526825 Bva09g00113 09 520613 526825 ECH
Bva09g00113 09 520613 526825 Bva07g02533 07 20201434 20207668 ECH