Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01452 ATGAAGAGGGACATAATAAAACTGGTATCAGATGGCTTGTGTAGAGAAGCTCTTCTCCTATACCACCAACTCCATTCTGCATCACACAGTCCTCATAGTTTCACGTTTCCCCCTCTTCTCAAAGCATGTGCTAAGCTCGAATCACCTTTGCAAGGGCAGATGCTACATGCCCACATCATTAAAACCGGTTTTCAAGCTGACATGTATACTTCTACCGCTCTCACAGGCATGTATATGAAACTGAATTATCTCAGTGACGCCCTCATGGTGTTTGACGTTATGTCTCACCGAAACGCGGCTTCATTGAATGCGACAATTTCTGGGCTGTCGCAAAATGGTTATGGCGGAGAAGCTCTTCGAGTGTTTAAACAAATTGGGTTGGGGACGCTTAGGCCGAACTCAGTTACTATAGCTAGTTTATTGCCTGCTTGTGATACGGTCAACCATGGTACACAAGTACATTGCTGGGCAGTCAAATTGGGGGTTAATATGGATGTTTACGTCGCAACCTCGCTTATTACCATGTATTCCAATTGTGAAGAGTTAGTTGCGGCGACTAAAGTGTTTGATGGATTGCTTACCAAGAATGTGGTGAGCTACAATGCTTTCATATCTGGGCTCCTGCAAAATGGTGTTCCTCGTCTGGTGATGGATGTGTTTAAGGACATGAGGGAGTGTTCAGACAGTAAACCCAATTCGTTAACTTTGGTTTCCGTTCTTTCTGCATGTGCTAGTCTATTGTATCTTCGTCTTGGCAGGCAGGTTCATGGTCTGATCACAAAAGTTGAAACAGGGACTGATATTACTGTAGTGACTGCACTAGTTGATATGTATTCCAAGTGTGGTTGTTGGAGTTCAGCTTTTGATTTCTTCGCTGAACTTGAAGGGAATAGGAACTTGATTACGTGGAACTCGATGATTTCTGGAATGATGTTGAATGCACAAATTGATAAAGCTGTTGAACTATTTCAACAACTAGAATCTGAAGGACTGCGCCCTGATTCAGCAACTTGGAATTCGATGATCACTGGGTTTGCACAAGAAGGGAAGAGTTTCGAGGCTTTTAAATTCTTTAGGAAAATGCAATCAGATGGTGAGGTTCCAAGTTTAAAAACTCTCACTAGTCTTATGGCAGTATGTTCAAATTCATCTGCTTTAAGATGTGGAAAAGAGATCCATGGACATGCTCTCAGAACTGATATTCATACAGATGAATTTATGGCAACTGCACTAATTGACATGTATATGAAATGTGCCCATTCTTGTTGGGCACGAAGAATTTTTGATCAGTTCGATATAAAACCAGATGACCCAGTAATTTGGAACGCAGTGATTTGTGGATATGGAAGAAACGGAGATTATGAGTCTGTCTTTGAAATCTTTGATAAGATGCGGGCGGAAATGATTCAACCAAACACTGCTACATTTGTTAGTGTGTTATCTGCGTGCAGCCACACTGGTCAAGTAGACACAGGGTTGAAAGTATTCACAATGATAAGAAGAGATTATGGCTGGCAGCCAAAGCCTCAGCACTTTGGTTGCATAATTGACCTTTTGGGTCGATCCGGCAGGCTGGGTGAAGCTCGAGACCTGGTGCAAGAATTAGTAGAGCCTTCTCCCGCTATTTATGCTTCTCTGCTAAGTGCTTGTAGCTCCTACTTAGATTCTGATCTTGGGGAGGAAATAGCTATGAAGCTTCTAGACTTAGAACCGGAAAATCCAGCTCCTCTTGTGATTCTATCCAACATATATTCAGGGCTGGGAAGGTGGCGAGATGCAGAAAGGATAAGAGGAACGATAGAGCGTAAAAGATTGAACAAACTTCGTGGGTTTAGCATGCTAGAAGCTTCATA 1853 0.4253 MKRDIIKLVSDGLCREALLLYHQLHSASHSPHSFTFPPLLKACAKLESPLQGQMLHAHIIKTGFQADMYTSTALTGMYMKLNYLSDALMVFDVMSHRNAASLNATISGLSQNGYGGEALRVFKQIGLGTLRPNSVTIASLLPACDTVNHGTQVHCWAVKLGVNMDVYVATSLITMYSNCEELVAATKVFDGLLTKNVVSYNAFISGLLQNGVPRLVMDVFKDMRECSDSKPNSLTLVSVLSACASLLYLRLGRQVHGLITKVETGTDITVVTALVDMYSKCGCWSSAFDFFAELEGNRNLITWNSMISGMMLNAQIDKAVELFQQLESEGLRPDSATWNSMITGFAQEGKSFEAFKFFRKMQSDGEVPSLKTLTSLMAVCSNSSALRCGKEIHGHALRTDIHTDEFMATALIDMYMKCAHSCWARRIFDQFDIKPDDPVIWNAVICGYGRNGDYESVFEIFDKMRAEMIQPNTATFVSVLSACSHTGQVDTGLKVFTMIRRDYGWQPKPQHFGCIIDLLGRSGRLGEARDLVQELVEPSPAIYASLLSACSSYLDSDLGEEIAMKLLDLEPENPAPLVILSNIYSGLGRWRDAERIRGTIERKRLNKLRGFSMLEAS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01452 617 Pfam PPR repeat 102 124 IPR002885 -
Bva08g01452 617 Pfam PPR repeat 512 537 IPR002885 -
Bva08g01452 617 Pfam PPR repeat 271 296 IPR002885 -
Bva08g01452 617 Gene3D Tetratricopeptide repeat domain 148 248 IPR011990 GO:0005515
Bva08g01452 617 Gene3D Tetratricopeptide repeat domain 254 392 IPR011990 GO:0005515
Bva08g01452 617 Pfam PPR repeat family 437 484 IPR002885 -
Bva08g01452 617 Pfam PPR repeat family 299 346 IPR002885 -
Bva08g01452 617 Pfam PPR repeat family 195 244 IPR002885 -
Bva08g01452 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Bva08g01452 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Bva08g01452 617 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Bva08g01452 617 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Bva08g01452 617 TIGRFAM PPR: pentatricopeptide repeat domain 198 232 IPR002885 -
Bva08g01452 617 TIGRFAM PPR: pentatricopeptide repeat domain 337 369 IPR002885 -
Bva08g01452 617 SUPERFAMILY TPR-like 432 594 IPR011990 GO:0005515
Bva08g01452 617 Pfam E motif 553 614 IPR046848 -
Bva08g01452 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Bva08g01452 617 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 610 - -
Bva08g01452 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Bva08g01452 617 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Bva08g01452 617 Gene3D Tetratricopeptide repeat domain 432 614 IPR011990 GO:0005515
Bva08g01452 617 PANTHER OS07G0578800 PROTEIN-RELATED 6 610 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01452 Bva-Chr8 7599846 7601699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01452 31 615 Glycoside Hydrolase AT3G49170 27.395 3.26e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01452 - - qsu:112009847 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01452 08 7599846 7601699 Bva08g01452 08 7599846 7601699 ECH