Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01429 ATGGAAGGAGAACTCGTTCATGGCATCGTCGGAGAACAAAAGGAGAAAGTAGTTACAGATGAACGAAGCAAAGAAACAGATGACGAGAAGAATAAACGACAAGAGTATCACCATCATCAGCAAAGACAAAGGATTTGGAGTTGGGGGGCAGGAACTGACGGGCAGTTAGGAACGGGAAGACTTGAAGACGAGCACTTCCCTCAACTCCTTCACCACTCCTCTCTCTCCACAGTTCCACCCATCTCCTCCCTTGCCTGCGGCGGCGCTCACGTTATCGCCTCGACCTCCGcTGGAAAGGTACTGACATGGGGTAGAGGTAGTTCTGGTCAACTAGGCCATGGAGAGGTGGTTAACCATGGCTTGTATCCGAAACCTGTAACATGTTTGGACCCCTACTTCGTCACACATGTCTCAGCTGGTTGGAGCCACTCTGGTTTTGTTTCAGATAGTGGGTGCCTCTTCACTTGTGGGGATGGCTCATTTGGTCAGCTCGGGCACGGTGACTACACCTCACACTGCTCTCCTGTTACAGTCTCTCACTTCGCTAATCAGCATGTTGCGCAGATAGCTTGTGGCATGCGCCATTCCCTTGTCTTGTTGAAAGATTGTTCACTGAATCAAGTTTATGGATTTGGCTCTGGGAAGCGCGGTCAATTGGGCGTCTCCAAAGATAGAATCAAATCTATCAATCTTCCTCAAGTTGTTAGCGGCTTTGAAGATGtgaaaattgttgaaattgCTGCAAATGGCGATCACAGTGCAGCATTATCTGTTGATGGACATCTTTATACTTGGGGAAGAGGGTTCAAAGGCTGTGCAGATGCCCACTCTCCTCGGCGCCTAGATTCTTGTTTGAGTTTTGCCAAAGCAACTCTTGGGTGGAACCATACTTTAGCTTTAACTGGAGAGGGCGAGGTTTTCATGGTTGGCGGCAACCACCTTGGAGTTCTCCCCGATCCACAGAATTTCAGCCCTGCAAAGCAATTACCTGTAAATTCAAGAGAAGCTAATGTAGAGAAAGCCCCTGGTCTTGATGGGACAAAGATTGTTGATATTGCTGCCGGAGCTGAGCACTCTGCTTTGGTCACAGAGAATGGAGAAGTAAAGGCATGGGGTTGGGGCGAGCATGGTCAACTTGGCTTGGGAAATACATGTGACCAAGCCAGTCCTCTTACAGTGAGTCTCCACCATGATCAGAATGCAGCCACCAGAGTTTACTGTGGAAGTGGATTTACATTTGCTTTAACCATGCCCTCTAGTTCTTCTCAAACTtg 1274 0.4788 MEGELVHGIVGEQKEKVVTDERSKETDDEKNKRQEYHHHQQRQRIWSWGAGTDGQLGTGRLEDEHFPQLLHHSSLSTVPPISSLACGGAHVIASTSAGKVLTWGRGSSGQLGHGEVVNHGLYPKPVTCLDPYFVTHVSAGWSHSGFVSDSGCLFTCGDGSFGQLGHGDYTSHCSPVTVSHFANQHVAQIACGMRHSLVLLKDCSLNQVYGFGSGKRGQLGVSKDRIKSINLPQVVSGFEDVKIVEIAANGDHSAALSVDGHLYTWGRGFKGCADAHSPRRLDSCLSFAKATLGWNHTLALTGEGEVFMVGGNHLGVLPDPQNFSPAKQLPVNSREANVEKAPGLDGTKIVDIAAGAEHSALVTENGEVKAWGWGEHGQLGLGNTCDQASPLTVSLHHDQNAATRVYCGSGFTFALTMPSSSSQT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01429 424 Pfam Regulator of chromosome condensation (RCC1) repeat 98 146 IPR000408 -
Bva08g01429 424 Pfam Regulator of chromosome condensation (RCC1) repeat 207 256 IPR000408 -
Bva08g01429 424 Pfam Regulator of chromosome condensation (RCC1) repeat 366 415 IPR000408 -
Bva08g01429 424 Pfam Regulator of chromosome condensation (RCC1) repeat 44 93 IPR000408 -
Bva08g01429 424 Pfam Regulator of chromosome condensation (RCC1) repeat 150 199 IPR000408 -
Bva08g01429 424 MobiDBLite consensus disorder prediction 1 42 - -
Bva08g01429 424 PRINTS Chromosome condensation regulator RCC1 signature 100 116 IPR000408 -
Bva08g01429 424 PRINTS Chromosome condensation regulator RCC1 signature 293 311 IPR000408 -
Bva08g01429 424 PRINTS Chromosome condensation regulator RCC1 signature 361 382 IPR000408 -
Bva08g01429 424 PRINTS Chromosome condensation regulator RCC1 signature 81 94 IPR000408 -
Bva08g01429 424 PRINTS Chromosome condensation regulator RCC1 signature 44 60 IPR000408 -
Bva08g01429 424 PRINTS Chromosome condensation regulator RCC1 signature 189 205 IPR000408 -
Bva08g01429 424 MobiDBLite consensus disorder prediction 1 43 - -
Bva08g01429 424 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 352 362 IPR000408 -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 43 97 IPR000408 -
Bva08g01429 424 Gene3D - 7 332 IPR009091 -
Bva08g01429 424 Gene3D - 333 421 IPR009091 -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 365 IPR000408 -
Bva08g01429 424 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 189 199 IPR000408 -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 98 150 IPR000408 -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 151 202 IPR000408 -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 259 IPR000408 -
Bva08g01429 424 SUPERFAMILY RCC1/BLIP-II 43 324 IPR009091 -
Bva08g01429 424 PANTHER OS01G0777800 PROTEIN 45 413 - -
Bva08g01429 424 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 45 413 - -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 418 IPR000408 -
Bva08g01429 424 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 260 303 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01429 Bva-Chr8 7482470 7485250 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01429 - - gmx:100814103 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01429 08 7482470 7485250 Bva08g01429 08 7482470 7485250 ECH