Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01381 ATGAGCAGTCATGTTATCCTCTCACCTCGACACTCTCCAATTACAGGGACTTTCTTCTTCCCTCCGTACAAGACCTCTTCGTTGCTTCCCAAACCTCCATTTCGCTATCCATCACTAGGGTTTCCCCACATATGTCCAAGCTCACTCAAATTTCGAGTCTCCTTTAAGTCCGCTAGCTCAATCTTTCCTGTTAATTCTCAGCTCTCCGATGCAGAGGAAGAGGAATtcgaagaaaaggaagaagaatacGATGAAGATGACGGTGATGATATTGCCGCCGATGAGTATGACGAAATTCCCGGCGGCATATCCGACGATGAAGACACTGAAACTTTCGCGGCTGAAACTGCTCTCCGCGAAGGATTCAAGTGGGAGAGGGTGGAGAAGCTATGCAAAGAAGTCAAAGAGTTTGGCGAGGAAATCATTGATGTTGATGAACTTGCTTCCATTTATGATTTCCGAATTGATAAATTTCAGCGGCTGGCAATACAAGCATTCTTAAGAGATTCATCAGTGGTGATTTCAGCTCCGACAAGCAGTGGAAAGACTCTGATCGCGGAAGCCGCAGCCGTGGCAACAGTAGCTAGAGGAAGGCGCATTTTCTATACGACTCCACTCAAGGCATTGTCCAATCAGAAGTTTCGTGAATTCCGTGAGACATTTGGCGACAGCAATGTTGGCCTCCTTACAGGCGATTCTGCAGTCAACAAGGATGCTCAGGTTTTGATTATGACTACAGAGATATTACGCAACATGTTGTATCAGAGTGTTGGTAATGCTTCTTCTGGAAGTGGACTTTTCCATGTCGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGCACGGTTTGGGAGGAGATTGTTATTTATTGTCCTAAAGAAGTTCAACTTATATGTCTGTCCGCAACGGTTGCAAATCCAGATGAGCTGGCTGGCTGGATAGGTCAGATTCATGGTAAAACAGAGTTGGTAACATCATCAAAACGTCCAGTTCCATTGACTTGGCATTTCTCTACGAAGACCTCTTTATTACCACTTCTTGATGAGAAAGGAAAGCGTATGAATAGGAAGCTGTCGCTCAATTATTTACAACTTCAAGCTTCAGGAGGTAGACCTTACAAAAATGATtggtcaaaaagaagaaattccaGAAAACGTGGAGCTTACATGAGCTATGAAAGTGATGGTGATATTCTTGAACAGCGTTCTCTTTCAAAGAATGACATAAACACAATTCGTCGTTCCCAAGTTCCACAAGTCGTTGATACATTATGGCAACTTCAGGAAAGGGATATGCTCCCAGctatttggtttatttttagCAGGAAAGGTTGTGATGCAGCAGTCCAATACCTTGAAGATTGCAACCTCTTAGATGAAAGTGAGGCTAGTGAGGTTGAACTAGCGTTGAAGAGGTTCCGCATTCAGTATCCTGATGCTGTTAGAGAATCAGCTGTGAGAGGACTTTTGCAAGGGGTTGCTGCACATCATGCTGGTTGTCTACCTTTGTGGAAGGCATTTATAGAAGAATTGTTTCAAAAGGGCCTTGTCAAGGTTGTTTTTGCTACTGAAACCCTTGCTGCTGGAATTAATATGCCTGCCAGGACATCCGTTATTTCGTCCCTTAGTAAAAGGAGTGATAGTGGACGTGTCCAATTAAACTCAAACGAATTACTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAAAGTGGTCACGTAGTCCTTATCCAAACCCCTTATGAAGGTGCTGAGGAGTGCTGCAAGGTTCTATTCGCTGGACTTGAGCCTCTAGTGTCACAGTTCACAGCTTCATATGGAATGGTTTTAAATCTTCTTTCTGGTGTTAAAGCAATTCATAGATCAAATGAATCAGATGACATGAGACTTTCCACGGCAGGGAAATCTCTGGAAGAAGCTAGGAAGTTAGTTGAGCAGAGTTTTGGAAACTATGTTAGTAGCAATGTTATGCTGGCCGCTAAAGAGGAACTTACTAAAATTGAGAAAGAGATTGACTTGCTGACATCTGAAATAAGCGATGAGGCCATAGATAGAAAAAGTAAGAAAGCTTTATCACAGAGGGAATATAATGAGATTGCAGATTTACAGGAACAATTAAGGGCAGAAAAACGTTTGCGGACTGAGTTGCGAAAACAGGTGGAAGCAAAGAGAATTTCTTCCCTGAAACCTTTACTAAAAGAGTCTGAAAGTGGGCATTTACCATTTCTCTGCTTGCAGTATAAAGATTCTGAAGATGTTCAACATTCAGTTCCTGCCATGTATTTGGGGAAGGTTGACTCCCTTAACTCTTCAAAGCTCAAGGTCATGGTTTCGTCTGATGATTCCTTTACACTAATAAATGCAGAGCTAAGTGCTACTGATTCTGAGTTGAGTAAAGATCTTGAATCATCGTATCATGTGGCCCTTGGTTCGGATAACTCTTGGTATCTGTTTACAGAAAAGTGGATCAAAACAATATATGGAACAGGTTTCCCTAATGTTGCATTAGCTCAAGGGGATGCTCTGCCTCGAGAAATTATGAGTATGCTTCTTGATAAGGAGGAGATGAAGTGGGATAAACTTGCTCACTCTGAACATGGTGGTTTGTGGTTTATGGAAGGATCTCTAGAGACGTGGTCTTGGAGTTTGAACGTTCCTGTTTTCAGTAGTTTCTCTGAAGATGATGAGCTACTACAAAAGTCTCAAGCATATATAGATGCCATTGAACGTTACAAGGAGCAAAGAAATAAAGTTTCACgcttgaagaaaaagatagcACGTTCTGAAGGCTTCAAAGAATATAAGAAGATCATAGACATGGCCAAGTTTACTGAGGAGAAAATCAAACGCCTGAGAACTAGATCGAAACGTTTGACCAATCGGATAGAGCAAATTGAACCCTCAGGTTGGAAGGAGTTTCTGCAAGTTAGCAATGTCATACATGAAACCAGGGCTTTAGATATCAATACACATGTCATATTTCCACTTGGTGAAACCGCAGCAGCAATTCGAGGAGAAAATGAGCTATGGCTTGCAATGGTTTTTcgcaataaaattttgctagAACTAAAACCTGCAGAACTTGCTGCTGTTTGCGGAAGTTTGGTGTCTGAAGGCATCAAACTCCGACCCTCGAAAAATAACAGTTATATATATGAGGCTTCAACTACTGTAATCAATATCGTAAATTTCTTGGAAAAGCAAAGAAGCGCCCTGTTGAAGATCCAAGAGAAACATGGGGTAACAATACCTTGCGGTTTGGATAGCCAGTTTTCTGGTATGGTTGAGGCCTGGGCTTCTGGGTTAACTtggaaagaaataatgatggaTTGTGCAATGGATGATGGTGATGTAGCTCGCCTCCTTCGACGCACCATTGATCTATTAGCTCAGATTCCAAAATTGCCAGATATTGACCCACTGTTGCAGCGCAATGCAGTGGCTGCCGCCGATGTCATGGACCGGCCACCAATAAGTGAACTAGCTGGATA 3512 0.4132 MSSHVILSPRHSPITGTFFFPPYKTSSLLPKPPFRYPSLGFPHICPSSLKFRVSFKSASSIFPVNSQLSDAEEEEFEEKEEEYDEDDGDDIAADEYDEIPGGISDDEDTETFAAETALREGFKWERVEKLCKEVKEFGEEIIDVDELASIYDFRIDKFQRLAIQAFLRDSSVVISAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNASSGSGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGKRMNRKLSLNYLQLQASGGRPYKNDWSKRRNSRKRGAYMSYESDGDILEQRSLSKNDINTIRRSQVPQVVDTLWQLQERDMLPAIWFIFSRKGCDAAVQYLEDCNLLDESEASEVELALKRFRIQYPDAVRESAVRGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTSVISSLSKRSDSGRVQLNSNELLQMAGRAGRRGIDESGHVVLIQTPYEGAEECCKVLFAGLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMRLSTAGKSLEEARKLVEQSFGNYVSSNVMLAAKEELTKIEKEIDLLTSEISDEAIDRKSKKALSQREYNEIADLQEQLRAEKRLRTELRKQVEAKRISSLKPLLKESESGHLPFLCLQYKDSEDVQHSVPAMYLGKVDSLNSSKLKVMVSSDDSFTLINAELSATDSELSKDLESSYHVALGSDNSWYLFTEKWIKTIYGTGFPNVALAQGDALPREIMSMLLDKEEMKWDKLAHSEHGGLWFMEGSLETWSWSLNVPVFSSFSEDDELLQKSQAYIDAIERYKEQRNKVSRLKKKIARSEGFKEYKKIIDMAKFTEEKIKRLRTRSKRLTNRIEQIEPSGWKEFLQVSNVIHETRALDINTHVIFPLGETAAAIRGENELWLAMVFRNKILLELKPAELAAVCGSLVSEGIKLRPSKNNSYIYEASTTVINIVNFLEKQRSALLKIQEKHGVTIPCGLDSQFSGMVEAWASGLTWKEIMMDCAMDDGDVARLLRRTIDLLAQIPKLPDIDPLLQRNAVAAADVMDRPPISELAG 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01381 1170 SMART DSHCT_2 995 1169 IPR012961 -
Bva08g01381 1170 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 424 620 IPR001650 -
Bva08g01381 1170 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 50 1166 - -
Bva08g01381 1170 MobiDBLite consensus disorder prediction 70 87 - -
Bva08g01381 1170 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Bva08g01381 1170 Coils Coil 699 726 - -
Bva08g01381 1170 CDD SF2_C_Ski2 404 586 - -
Bva08g01381 1170 Pfam DEAD/DEAH box helicase 158 310 IPR011545 GO:0003676|GO:0005524
Bva08g01381 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 587 IPR027417 -
Bva08g01381 1170 Gene3D - 115 334 IPR027417 -
Bva08g01381 1170 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 50 1166 - -
Bva08g01381 1170 Coils Coil 911 931 - -
Bva08g01381 1170 Coils Coil 664 684 - -
Bva08g01381 1170 SMART ultradead3 151 341 IPR014001 -
Bva08g01381 1170 MobiDBLite consensus disorder prediction 66 87 - -
Bva08g01381 1170 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 327 IPR014001 -
Bva08g01381 1170 Coils Coil 948 968 - -
Bva08g01381 1170 Gene3D - 335 604 IPR027417 -
Bva08g01381 1170 Pfam DSHCT (NUC185) domain 999 1165 IPR012961 -
Bva08g01381 1170 SMART helicmild6 488 574 IPR001650 -
Bva08g01381 1170 Gene3D - 952 1162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01381 Bva-Chr8 7230046 7236182 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01381 K26077 - gmx:100780908 1773.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01381 08 7230046 7236182 Bva08g01381 08 7230046 7236182 ECH