Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01378 ATGAGAACCCATTTTCAACCATTTCAAGTGTTATTCTTCTGCCTATCCCTTCTAGCGGGTCTATCCAAACCCGACCCAGATCCGCTTCAAGACTACTGTGTTGCAGATAACAAAAAGCCTCAAGCTTTGTTCATCAATGGTGCACCTTGCATTTCCCCAAAGGATGCAGTCTCATCCCATTTTGCTACGTCAGCATTAGCCAAGGCTGGTGACACCAAGGCCAACCAGTTCGGTTTTAATGTCACCCTAACTAACATTGTTAATCTTCCCGGGCTTAACACCTTGGGCTTGGTACTGGCCCGGGTTGACATAGCAGCCAATGGAATCGTGCCACCTCATTCGCACCCACGGGCCACAGAAGTAACGACTTGCCTCCAGGGAGTCCTGCTTGTGGGCTTTGTTGACACATCGAACCGGGTCTTTACCCAGCAAATACGGGCCGGTCAGTCGTTTGTGTTCCCAAGGGGCTTGATCCATTTCCTTTATAATCTGGATTCTAGGAAGCCCGCATTAGCAGTGTCCGGGCTCAATAGCCAGAACCCAGGTGCTCAAATTGCATCAGTTGCCACATTCACAAGTAAACCTCCTATTCCAGAGGAAATACTAGAGAAGGCTTTCAAAATTACCAAGGATGACGTGGCAAGAATCCGTAAGAGCCTTGGAGGGTG 668 0.4895 MRTHFQPFQVLFFCLSLLAGLSKPDPDPLQDYCVADNKKPQALFINGAPCISPKDAVSSHFATSALAKAGDTKANQFGFNVTLTNIVNLPGLNTLGLVLARVDIAANGIVPPHSHPRATEVTTCLQGVLLVGFVDTSNRVFTQQIRAGQSFVFPRGLIHFLYNLDSRKPALAVSGLNSQNPGAQIASVATFTSKPPIPEEILEKAFKITKDDVARIRKSLGG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01378 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 221 - -
Bva08g01378 222 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Bva08g01378 222 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Bva08g01378 222 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Bva08g01378 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 10 221 - -
Bva08g01378 222 SMART Cupin_1_3 64 214 IPR006045 -
Bva08g01378 222 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Bva08g01378 222 CDD cupin_OxOx 25 220 - -
Bva08g01378 222 Gene3D Jelly Rolls 24 222 IPR014710 -
Bva08g01378 222 SUPERFAMILY RmlC-like cupins 25 218 IPR011051 -
Bva08g01378 222 Pfam Cupin 73 211 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01378 Bva-Chr8 7216007 7216937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01378 7 221 Miscellaneous Gene Families AT5G39130 40.639 1.10e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01378 - - twl:120007065 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01378 08 7216007 7216937 Bva08g01378 08 7216007 7216937 ECH