Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01372 ATGAGACTCCATTTCTTGGCTTTGGCCATATGTTTATCTCTCTCGCTCTCTTCCACTCGAGTTTCAGCTCGATTTTTCCCCAATATAACCGCCATTCCCCCTTCGGTAATAAATAACGCGCCACCCGGCGCTTGGGAATCCTTCAACAACTTCACCGGCTGCCGTCCCGGCGAGAAGTACGATGGTTTGAATAAGCTCAAGAAGTACTTCGACCACTTCGGCTACATCCCAAACGCGCCCTCGAACTTCACCGACGATTTCGACGACGAATTTGAAGAGGCCGTCAAAAAGTACCAGAAGAATTTCAATCTCAACGTCACCGGCGAGCTCGACGAGAACACTCTTCAGCAGATTATGAAGCCGCGTTGTGGCGTAGCCGATATTATCAACGGCACCACCACGATGAACTCTGGGAAAGAGAATACGACGTCGGCCAGTAACAGCACTCACTTCCACACTGTCTCTCACTACACCTTCTTTGAAGGGAAGCCACGGTGGCCGGAGGGGACGCAGGAACTAACATATGGGTTCTTGCCGGATAACCAATTAACGGACCAAGTAAAAAGCGTGTTCGCGACAGCGTTTGACCGGTGGGCGGAGGTGACAACTTTGACTTTCAGTGAAGCGTCGTCGTATTACACGGCAGACATCAGGATTGGGTTCTACACTGGGGATCACGGCGATGGGGAACCGTTCGATGGGGTCTTGGGGACGCTGGCCCACGCGTTTTCACCGACCAATGGGAGGTTCCATTTGGACGGCGACGAGGAGTGGGTGGTTTCGGGTGACGTGACGCAGTCGGAGCTATCGTCTGCGGTGGATTTGGAATCGGTGGCGGTTCACGAGATTGGGCATTTACTGGGGTTGGGTCACTCGTCGGATCTGGACGCGATTATGTACCCGACGATATCTTCACGGACGAGGAAGGTAGAGCTGAACAACGATGATATTAGTGGGATTCAGGAGCTATACGGGTCCAATCCAAATTACACTGGTTCCTCCACTACGTCGCAGGAGAGGGACTTCAGCCATGGCCACCACCTGACCGTAGTGGGCCATAGGTGGGGCCTGGCCACCTTCTTGTTCCTTGGATTTgcctttttgatttttta 1112 0.5234 MRLHFLALAICLSLSLSSTRVSARFFPNITAIPPSVINNAPPGAWESFNNFTGCRPGEKYDGLNKLKKYFDHFGYIPNAPSNFTDDFDDEFEEAVKKYQKNFNLNVTGELDENTLQQIMKPRCGVADIINGTTTMNSGKENTTSASNSTHFHTVSHYTFFEGKPRWPEGTQELTYGFLPDNQLTDQVKSVFATAFDRWAEVTTLTFSEASSYYTADIRIGFYTGDHGDGEPFDGVLGTLAHAFSPTNGRFHLDGDEEWVVSGDVTQSELSSAVDLESVAVHEIGHLLGLGHSSDLDAIMYPTISSRTRKVELNNDDISGIQELYGSNPNYTGSSTTSQERDFSHGHHLTVVGHRWGLATFLFLGFAFLIF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01372 370 Pfam Matrixin 170 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bva08g01372 370 Pfam Putative peptidoglycan binding domain 65 117 IPR002477 -
Bva08g01372 370 CDD ZnMc_MMP 165 325 IPR033739 GO:0008237|GO:0008270
Bva08g01372 370 PANTHER MATRIX METALLOPROTEINASE 22 365 - -
Bva08g01372 370 SUPERFAMILY PGBD-like 53 128 IPR036365 -
Bva08g01372 370 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 158 328 - -
Bva08g01372 370 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva08g01372 370 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva08g01372 370 PRINTS Matrixin signature 191 206 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva08g01372 370 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva08g01372 370 PRINTS Matrixin signature 215 243 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bva08g01372 370 Gene3D Collagenase (Catalytic Domain) 52 331 IPR024079 GO:0008237
Bva08g01372 370 SMART col_5 162 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bva08g01372 370 PANTHER MATRIX METALLOPROTEINASE 22 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01372 Bva-Chr8 7189506 7190883 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01372 - - gmx:100781471 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01372 08 7189506 7190883 Bva08g01372 08 7189506 7190883 ECH