Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01343 ATGGTACATTCAGCGGTGCTGGTGAAGATGTTTCCTGGAAACATGGTGTGCAACAACATTGATATGCTTGAAGAACTTGAAAGTCtggaaatagaagaagaaagtgaggTAGAATTTTCTGACATTCCTTCATGGAAAAGTGAGCGGGGTGGAAAGGTTCTTGTGAATGTAGATAGCTTTGCTGCAGTTGGAGATGGAGTATCTGATGATACCCAGGCCTTTCAAAAAGCATGGGACGTTGCTTGCTCTACACCAAAATCTGTTTTCTTAGTTCCCCAAGGTCGCAGTTATCTAATCAGcgcaacaaaatttaaaggacCTTGTGCAGACAAGATAATCATCCAGATTGATGGAACAATAATAGCACCGGATGAGCCTAAGAATTGGGATCCAAATTTTCAACGGGTTTGGcttgatttttctaaattgGATAAAGCTATTTTTCAAGGTGCTGGAGTTATTGATGGCTCAGGCAGCAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGTcgaatCCTTGCCGTGGCGCTCCAACGGCATTAACCATAGAATCAAGCACAGCTATAAGGGTGAAAGGGATAACTATCCAGAATAGTCAACAGATGAACTTTGTCATTTCACGGTGTGATACTGTTAGAATTAATGGCGTGAAAGTGTCTTCGCCAGGAGACAGCCCAAACACTGATGGAATCCACATAACTGCCTCAACAAATGTCGTAATCCAAGACACAAGAATTGGAACAGGGGATGATTGCGTATCAATTGTCAATGCTAGCTCTAAtatcaaaatgaagagaattTTTTGTGGACCTGGACATGGAATCAGtattgGAAGCCTCGGGAAGGACAACTCCACTGGCATAGTCACAAAGGTGATTTTGGATACTGCAGTTCTTAAGGAAACTACGAACGGTGTCAGGATTAAGACCTGGCAGGGAGGTTCTGGTTATGTTCGGGGTGTACGCTTTCAGAATGTGAGGATGGACGATGTATCAAACCCCATTATTATAGATCAATTCTACTGTGATTCACCAACCAGTTGTCAAAACCAGACATCTGCTGTGAAAGTAAGCGAGATCATGTACCGGAACATCAGTGGCACTACAAACAGTGCAAAGGCCATAAAATTTGACTGCAGCGACACAGTTCCCTGCAGCAACTTAGTCCTTAGCAATGTGGACTTGGAGAAACAGGATGGTACGGTGGAGACGTACTGCCACTCTGCTCAAGGCTTTGGCTATGGAGTCGTGCATCCTTCTGCTGATTGCCTTGCTTCCAGTGACAAAAGTGCTGAAATTACAGAATCAATTGCAGAGGATACTTGTCATACTGAACTATG 1340 0.4119 MVHSAVLVKMFPGNMVCNNIDMLEELESLEIEEESEVEFSDIPSWKSERGGKVLVNVDSFAAVGDGVSDDTQAFQKAWDVACSTPKSVFLVPQGRSYLISATKFKGPCADKIIIQIDGTIIAPDEPKNWDPNFQRVWLDFSKLDKAIFQGAGVIDGSGSKWWAASCKKNKSNPCRGAPTALTIESSTAIRVKGITIQNSQQMNFVISRCDTVRINGVKVSSPGDSPNTDGIHITASTNVVIQDTRIGTGDDCVSIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGIVTKVILDTAVLKETTNGVRIKTWQGGSGYVRGVRFQNVRMDDVSNPIIIDQFYCDSPTSCQNQTSAVKVSEIMYRNISGTTNSAKAIKFDCSDTVPCSNLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLASSDKSAEITESIAEDTCHTEL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01343 446 Pfam Glycosyl hydrolases family 28 86 406 IPR000743 GO:0004650|GO:0005975
Bva08g01343 446 PANTHER BNAA08G20470D PROTEIN 21 433 - -
Bva08g01343 446 SUPERFAMILY Pectin lyase-like 53 424 IPR011050 -
Bva08g01343 446 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
Bva08g01343 446 PANTHER - 21 433 - -
Bva08g01343 446 Gene3D - 44 445 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01343 Bva-Chr8 7027653 7031553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01343 15 446 Glycoside Hydrolase AT1G23460 70.872 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01343 - - pvu:PHAVU_003G061700g 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01343 08 7027653 7031553 Bva08g01343 08 7027653 7031553 ECH