Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01342 ATGAGTGGATTTTGTTTCAGAGGCTTCACATTTATGCTTCTCATTGCTTTTCTTATTTGGTCTTCTAATTTTGAAACCTGCATTGCAAGAAGAGGGAAGCATTGGAGGCAAAGCAGGGGAATCTCAGATTCTCTGTATaagaagaaagggaagaatCATGGCAATAGTCACAGCCACCATGGTGGAGGATCAAAGCCAAAGCCTCCACCACATAAGAGCACTCCATCGCCACATAAAGCTCCACCAAGTAAAAGCTTTCCATCGCCACCCCCATTTCCAAAGCCACCAAAAGGTAATAACCCACCAGCTCCTAGCAGAGGAGGCCATTCTACTATCTTTAATGTGCTAGATTTTGGAGCTAAGGGTGATGGAAGTTCTGATGATACAAAGGCATTCCAAGCTGCATGGGCACAGGCTTGCAAGGTAGAGGGATCAACCATGCTCGTCCCAGCAGATTACGTATTCCATGTGGGACCCATTTCATTCTCAGGACCATACTGTCAACACAACATTGTTTTTCAGctTGATGGTACAATACTTGCTCCAACAGACCCCAAGGTCTGGGGCGGAGGACTTTTACAGTGGCTGGAATTCTCAAAGCTGGTGCAAATTACCATTCAAGGAAAAGGTGTCATTGATGGAAAAGGCTCTGTCTGGTGGCAAGATCATCCATTTGATGATCCCAtagatgatgaagaaaaactCATCGTCCCATTAAACCAAACAGCAAGACGGCCACCGATGCCGATTCAAAGTGAGATGAAAGGGAAAATGCCAAGCATCAAACCAACTGCACTGCGGTTCTACGGGAGTTTAGGTGCAACCGTCACGGGCATAACAATTCAGAACAGTCAACAATGTCACCTCAAGTTTGACAACTGTGATGGAGTCCTGGTTCATGATGTGACCATATCATCCCCCGGTGACAGCCCCAACACGGATGGAATTCACCTTCAGAACTCCAAAGATGTGCTGGTTCACAGCAGCAGTTTGGCTTGTGGAGATGACTGTATTTCGATACAAACTGGTTGCTCAAATGTATTCGTGCACAATGTGAATTGTGGGCCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAAAGCCTGTGTCTCAAACATCACTATCCGAGACGTAAATATGCATAGCACAATGAATGGTGTCAGAATCAAGACATGGCAGGGAGGATCAGGTTCTGTGCAGGGGGTGCTGTTTTCTAATATACAAGTTTCTGAAGTTCAACTTCCAATTGTGATTGACCAATTCTATTGCGATAAAAGAACATGCACAAACCATACATCAGCTGTGGCTCTCCAAGGAATCAATTATGAAAGAATAAGGGGGACCTACACAGTTAAACCAGTACACTTTGCTTGTAGTGATAGCCTACCATGTGTGGATGTTTCTTTAACTTCCATTGAGCTAAAACcacttcaagaaaaatatcacCTATATGATCCATTTTGCTGGCAGACTTATGGCGAATTAAGAACTCCCACAGTCCCTCCAATTGCTTGTCTACAGATTGGGAAGCCAGCAAGCAACCATGTTCAGACTGATCATGATTTGTGTTG 1583 0.4327 MSGFCFRGFTFMLLIAFLIWSSNFETCIARRGKHWRQSRGISDSLYKKKGKNHGNSHSHHGGGSKPKPPPHKSTPSPHKAPPSKSFPSPPPFPKPPKGNNPPAPSRGGHSTIFNVLDFGAKGDGSSDDTKAFQAAWAQACKVEGSTMLVPADYVFHVGPISFSGPYCQHNIVFQLDGTILAPTDPKVWGGGLLQWLEFSKLVQITIQGKGVIDGKGSVWWQDHPFDDPIDDEEKLIVPLNQTARRPPMPIQSEMKGKMPSIKPTALRFYGSLGATVTGITIQNSQQCHLKFDNCDGVLVHDVTISSPGDSPNTDGIHLQNSKDVLVHSSSLACGDDCISIQTGCSNVFVHNVNCGPGHGISIGSLGKDNTKACVSNITIRDVNMHSTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCTNHTSAVALQGINYERIRGTYTVKPVHFACSDSLPCVDVSLTSIELKPLQEKYHLYDPFCWQTYGELRTPTVPPIACLQIGKPASNHVQTDHDLC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01342 527 SMART pbh1 374 395 IPR006626 -
Bva08g01342 527 SMART pbh1 403 424 IPR006626 -
Bva08g01342 527 SMART pbh1 344 364 IPR006626 -
Bva08g01342 527 SMART pbh1 321 342 IPR006626 -
Bva08g01342 527 SMART pbh1 294 320 IPR006626 -
Bva08g01342 527 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 517 - -
Bva08g01342 527 MobiDBLite consensus disorder prediction 51 66 - -
Bva08g01342 527 MobiDBLite consensus disorder prediction 68 102 - -
Bva08g01342 527 MobiDBLite consensus disorder prediction 38 110 - -
Bva08g01342 527 ProSitePatterns Polygalacturonase active site. 351 364 IPR000743 GO:0004650|GO:0005975
Bva08g01342 527 Gene3D - 103 520 IPR012334 -
Bva08g01342 527 SUPERFAMILY Pectin lyase-like 110 525 IPR011050 -
Bva08g01342 527 Pfam Glycosyl hydrolases family 28 145 222 IPR000743 GO:0004650|GO:0005975
Bva08g01342 527 Pfam Glycosyl hydrolases family 28 260 479 IPR000743 GO:0004650|GO:0005975
Bva08g01342 527 PANTHER - 6 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01342 Bva-Chr8 7014381 7020532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01342 4 527 Glycoside Hydrolase AT1G60590 67.917 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01342 - - gmx:100783813 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01342 08 7014381 7020532 Bva08g01342 08 7014381 7020532 ECH