Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01315 ATGGAGATGGGTTTCATGTGGATGAGGCGCATGGGAATAGCGGGATATAACTCTACTCTTCTATCGAAGCCTAGCATGGCTGCACTATTTTCTGCAGCCCATCACAAACCCATTTCGTTCTCTAACGTGAAAACGCCACTCTATCTCATCTCACTCGTCCCTCCCCTTCGCCGCTCGCTTTCAGCTAGAGCTTCGTGTTCTCCGGTTCCTCCTATTAACTTAGACGAGAATTGCTCCGATTTCGACAGTCATTGTACTACAATTTCAGGGAAAGGGTCGAAGGTTGTTCTTAAGGAGATGACATACAATGAGCTTAAAAAATGGGTCCAGTCACATGGATATAGACCTGGGCAGGCGATGATGTTATGGAAGCGTCTCTATGGAAACAACATTTGGGCACATCATAGCGATGAGTTGGAAGgtttaaataaagattttaagaaGATGCTGAGCGAAAATGCTGACTTCAGGGCCCTTTCTCTAAAAGAAATTCGTACAGCATCTGACGGAACTAGGAAGATTTTATTCACATTGGATGATGGACTGGTCATCGAGACAGTTGTCATACCTTGTGATAAGGGCAGAACTACTGTGTGTGTTTCAAGTCAAGTAGGATGTGCCATGAACTGTCAATTCTGCTATACTGGAAGAATGGGTCTTATGAGACATCTTACGGCAGCAGAAATTGTAGAGCAGGCTGTTTTTACCCGGCGTTTGCTCACAAGTGAAGTTGGCTCCATCACAAATGTTGTCTTTATGggCATGGGAGAACCACTTCATAACATTGATAATGTCATCAAAGCTGCAGATATTATGGTCGATGATCAAGGGCTTCATTTCAGTCCTCGAAAGGTCACTGTCTCAACCAGTGGGCTTGTTCCACAGCTCAGACGTTTCCTTCATGAGTCCACCTGTGCTTTAGCTGTTAGTTTGAATGCAACAACTGACGAGGTAAGAAACTGGATTATGCCAATAAACCGGAAGTACAAATTGGATTTGCTTCTTCAAACTCTTAGGGAAGAGCTTCGCTTCAAACATAACTATAAAGTTCTATTCGAGTATGTCATGCTTGCGGGAGTTAATGACAGTGATGACGACGCAAAGAGGCTTATCGATCTTGTTAGGGGCATTCCTTGCAAGATCAATCTCATTTCATTCAATCCACATAGTGGATCACTGTTCAAACCAACCAAAGAGGAAAGGATGATTGAATTTCGAAACACATTGGCTGAAGCTGGGTGCACGGTCCTTTTACGACTCAGTAGAGGGGATGATCAGATGGCTGCCTGTGGTCAGCTAGGCAAGCCTGGCACCATTCGGGTTCCATTGCTCCGTGTACCTGAGCAATTCCAAATGGCAGTTGGAAGTTCACCATG 1376 0.4411 MEMGFMWMRRMGIAGYNSTLLSKPSMAALFSAAHHKPISFSNVKTPLYLISLVPPLRRSLSARASCSPVPPINLDENCSDFDSHCTTISGKGSKVVLKEMTYNELKKWVQSHGYRPGQAMMLWKRLYGNNIWAHHSDELEGLNKDFKKMLSENADFRALSLKEIRTASDGTRKILFTLDDGLVIETVVIPCDKGRTTVCVSSQVGCAMNCQFCYTGRMGLMRHLTAAEIVEQAVFTRRLLTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDDQGLHFSPRKVTVSTSGLVPQLRRFLHESTCALAVSLNATTDEVRNWIMPINRKYKLDLLLQTLREELRFKHNYKVLFEYVMLAGVNDSDDDAKRLIDLVRGIPCKINLISFNPHSGSLFKPTKEERMIEFRNTLAEAGCTVLLRLSRGDDQMAACGQLGKPGTIRVPLLRVPEQFQMAVGSSP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01315 458 Gene3D Aldolase class I 159 438 IPR013785 -
Bva08g01315 458 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 92 433 IPR027492 GO:0030488|GO:0070475
Bva08g01315 458 Pfam 4Fe-4S single cluster domain 205 295 - -
Bva08g01315 458 Gene3D - 94 157 - -
Bva08g01315 458 SUPERFAMILY Radical SAM enzymes 194 412 - -
Bva08g01315 458 Pfam Radical SAM superfamily 201 367 IPR007197 GO:0003824|GO:0051536
Bva08g01315 458 ProSiteProfiles Radical SAM core domain profile. 192 425 IPR007197 GO:0003824|GO:0051536
Bva08g01315 458 SFLD adenosine C2 methyltransferase (RlmN-like) 93 435 IPR004383 GO:0006364|GO:0008173
Bva08g01315 458 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 94 439 IPR027492 GO:0030488|GO:0070475
Bva08g01315 458 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 63 438 - -
Bva08g01315 458 CDD Radical_SAM 205 405 - -
Bva08g01315 458 PANTHER 23S RRNA METHYLTRANSFERASE 63 438 IPR040072 -
Bva08g01315 458 SFLD methyltransferase (Class A) 93 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01315 Bva-Chr8 6886417 6889919 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01315 K06941 - gmx:100813692 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01315 08 6886417 6889919 Bva08g01315 08 6886417 6889919 ECH