Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01312 ATGGCGGATTCCGCCTCTTCTCCTGCTGCAACCCTAGAATCCAATCGTCAACAATCCGAACCTGTAGTTCCGAACTCTCATATTAATCAATCCGATCCGGTTCCCGCCTCCACGCCGCCACCACCAACGCAGCCACAATCATCAACACCATCCCCTGCACCTATTACGTTAAACCCTAATTCGAATCCCCCATTACCGCATACTATTTCATATCCGGCGATGCCGTCCTTCAGGCCTGTTGCTCCACAGACTCCTCAGTTCTCTCCCATACCTAATCCCGGTGGCATGCCAAATCTCGCCTATCAGAACCCTGCTGTTCCCCCTCCTGGTGTGAGTTCTGCCTCCGTGGTGACTCCTGGCGTGGCTAGTGGTCCGGGAGCTGTTCCAGTTTCCGTGCCACAAGTGCAGGCGCAGATGCAACCAATGATGTCTTATCAGGTTCCCCTCGGCCAGCCCCCTAATCCTGCTCTGAGGCATTATGCACCGATGCCCAATGGCTACACAACCATTCCAGCAGTTCCACAAGGAACGATACCTCCTCCGGGAGTGCCTCGTTACCCCCATCCATATGGAACTATGGTTCGTCCTGCATATCCGCCACGCCCTCATGGAGCAGTTAATGTGCTTCCAACTGTTTCACGCCCCCCTGTAGCTGGGATCCCTGGAGCTCGCCCTCTGATTCCCCCAATTGCGAGGCCGGTGGTTGCTCCTAGTATTACCCCAGCAGAGAAACCCCAAACTACAGTTTATGTTGGCAAGATAGCATCAACTGtggaaaatgattttatgCTTTCGCTCCTTCAGTTATGTGGACCTGTGAAGAGCTGGAAACGTCCTCAAGATCCATCGAATGGAACTCCTAAATCCTTTGGGCTTTGTGAGTTTGAGTCTGCTGAAGGGGTTCTTCGTGCCTTGCGTCTGCTTTCTAATCTTAATATTGATGGGCAAGAACTAGGGCTCAAAGTTGATGAAGCTACGAGAAAATATTTGGAGCGGTACGTTGAGAAAAAGGCTGAGaactcaaagaaaaaagaaagcgaAGCTGCAGGACCTGAAAAAGATGATGGAAGTGCACAACCTTGCGATGCAAACGAGGATGGGAAGCCTGATGCAGAGCACTCAAAGAAAGAGGATAATGATTTAGGGACCAAGGAAAACCATGATGCCTCAACCTTTGGCATTGTTACTGATGATGACAAGGAAGCTGATCAAGAGGCTTTGGGAAAACTTACTAGTATGGTAGAAGAGAGGTTGAAGACCAGACCTTTGCCTCCGCCTCCTGCACAGGCAGCTGCTGATGGCTCTGTCAGTTTAGCATCTGAACAACCTGCTAAAGCAAGGGATGGAGACACTGATGTGGATAAGCTGAAGAATGAAGCAGCTGAAGACAAACATGACAAAGAGACAAATAGTGACAACAAACCAACCAGTGAACATGATAAGCCTGATACCCCTGATAGAAGATATGATAGGAAAGGCAGAGAAAGAGACCGAGAGAGGGAACTAAAacgagaaaaggaaagagaactTGAAAGGTACGAAAGAGAGGCTGAGTGGGAacgaatgaagaaagagagggagCAAAGGAGGAGGATTGATGCAGCTGAACGTGAATATGAAGCCCGCTTGAAGGAATGGGAGTatagagagaaagggaaagaaagagacCGGCAGTATGAAAAGAAGgaggagaaagaaagggaaCGCAAACGGAGAAAGGAAATTCTTTTAGATgaagaggatgaagatgatgattcAAGGAAGAGGTTGCGCAGAAGTGTCTTAGAggagaagagaaggaagaggCTCCGTGAAAAGGAAGATGACCTGGCTGACAGactaaaagaagaagaagaaattgctGAGGTCAAGAGGAGGGCTGAGGAAGATCAGCAACAGAAGCGCCAGAGAGATGCATTGATGCTATTATCTGGCCACATGACGAATGTTGTTGAAAAACGTATAGCTACTGAAGAGGTTACTAATGAAGCCAACAGTATAATTGCTGAACAAGATACTGCAGCTAATAATGGTAATGAAGATCATATAGGTAATGGAAATTCACTAAATAGCATCAATGACGAATCGACTATAGCATCAGTTGCTGCAAGTGATACACGGCAAGGTGACAATGTCCCTACAAAGAAGTTGGGTTTTGGTCTTGTTGGGTCTGGAAAAAGAACGACTGTCCCTTCTGTTTTCCATGAGGAGGAGGATGATGACACACACAAGGATAAAAAGATGAGGCCTCTGGTTCCGATTGATTACTCGACTGAGGAATTGCAGGCTGTTCAACCTACTGCTTCTGCACCGACGCCACCAAATTTGGCTGCAGCAGCAGAATTTGCAAAACGATTATCAAATGCCAATCTCAAGGAAGAGAAGCAGGATGGAGAACGGGATAGAGGTAGGCGTTCTAATGATAAATCTAACCACCGGGACAGGGACAAGAATGATGAAGATGGCACTCACAACAGAGATGAAAGCAAGGAGAAGAAGCTTTTGGATTTGAAAGCAAGAAAGTTAATTGATACTATACCCAAGACCAAGGAGGAGCTGTTCTCATATGAGATAAACTGGGCAGTGTATGACAAGCATCAGCTGCATGAAAGAATGAGACCATGGATTTCAAAGAAGATCACAGAATTTctgggagaagaagaaactacCTTGGTAGATTACATCGTTTCCAGCATGCAAGAACATGTGAAAGCATCACAGATGCTGGACCTGCTACAGTCTATTTTGGATGATGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATgcttatatttgaaataaagaagGTAGAGATCGGCCTTCCTGTGAGGTCAAaatcatg 2846 0.4336 MADSASSPAATLESNRQQSEPVVPNSHINQSDPVPASTPPPPTQPQSSTPSPAPITLNPNSNPPLPHTISYPAMPSFRPVAPQTPQFSPIPNPGGMPNLAYQNPAVPPPGVSSASVVTPGVASGPGAVPVSVPQVQAQMQPMMSYQVPLGQPPNPALRHYAPMPNGYTTIPAVPQGTIPPPGVPRYPHPYGTMVRPAYPPRPHGAVNVLPTVSRPPVAGIPGARPLIPPIARPVVAPSITPAEKPQTTVYVGKIASTVENDFMLSLLQLCGPVKSWKRPQDPSNGTPKSFGLCEFESAEGVLRALRLLSNLNIDGQELGLKVDEATRKYLERYVEKKAENSKKKESEAAGPEKDDGSAQPCDANEDGKPDAEHSKKEDNDLGTKENHDASTFGIVTDDDKEADQEALGKLTSMVEERLKTRPLPPPPAQAAADGSVSLASEQPAKARDGDTDVDKLKNEAAEDKHDKETNSDNKPTSEHDKPDTPDRRYDRKGRERDRERELKREKERELERYEREAEWERMKKEREQRRRIDAAEREYEARLKEWEYREKGKERDRQYEKKEEKERERKRRKEILLDEEDEDDDSRKRLRRSVLEEKRRKRLREKEDDLADRLKEEEEIAEVKRRAEEDQQQKRQRDALMLLSGHMTNVVEKRIATEEVTNEANSIIAEQDTAANNGNEDHIGNGNSLNSINDESTIASVAASDTRQGDNVPTKKLGFGLVGSGKRTTVPSVFHEEEDDDTHKDKKMRPLVPIDYSTEELQAVQPTASAPTPPNLAAAAEFAKRLSNANLKEEKQDGERDRGRRSNDKSNHRDRDKNDEDGTHNRDESKEKKLLDLKARKLIDTIPKTKEELFSYEINWAVYDKHQLHERMRPWISKKITEFLGEEETTLVDYIVSSMQEHVKASQMLDLLQSILDDEAEMFVLKMWRMLIFEIKKVEIGLPVRSKS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01312 948 MobiDBLite consensus disorder prediction 34 49 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 789 830 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 731 752 - -
Bva08g01312 948 Gene3D PWI domain 825 943 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 702 752 - -
Bva08g01312 948 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 33 947 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 1 33 - -
Bva08g01312 948 CDD RRM_RBM25 247 330 IPR034268 -
Bva08g01312 948 MobiDBLite consensus disorder prediction 56 70 - -
Bva08g01312 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 327 IPR000504 GO:0003723
Bva08g01312 948 MobiDBLite consensus disorder prediction 606 635 - -
Bva08g01312 948 ProSiteProfiles PWI domain profile. 851 948 IPR002483 GO:0006397
Bva08g01312 948 Gene3D - 239 355 IPR012677 -
Bva08g01312 948 SUPERFAMILY RNA-binding domain, RBD 241 318 IPR035979 GO:0003676
Bva08g01312 948 Coils Coil 600 633 - -
Bva08g01312 948 Coils Coil 489 545 - -
Bva08g01312 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 318 IPR000504 GO:0003723
Bva08g01312 948 SMART pwi_2 864 937 IPR002483 GO:0006397
Bva08g01312 948 Pfam PWI domain 871 934 IPR002483 GO:0006397
Bva08g01312 948 SUPERFAMILY PWI domain 869 936 IPR036483 GO:0006397
Bva08g01312 948 MobiDBLite consensus disorder prediction 445 534 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 1 83 - -
Bva08g01312 948 SMART rrm1_1 248 323 IPR000504 GO:0003723
Bva08g01312 948 Coils Coil 548 582 - -
Bva08g01312 948 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 33 947 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 550 591 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 336 534 - -
Bva08g01312 948 MobiDBLite consensus disorder prediction 336 416 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01312 K12822 - gmx:100809428 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01312 08 6864923 6870366 Bva08g01312 08 6864923 6870366 ECH