Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01309 ATGGCACTTATCCAACAAGAGTTGCTCCTCTCTGCTCTCCTAATCCTCTGCTTAACAATTGAGGTTTCTTCACATGACAGGCGTTTCACAGTCCCAAGTGTCACCCGTTTAACGGATTATTTTCCCCGTGTCCCAGTTGATCGTGCCTATTCTAAAGCTTTTGGGGCCTCAAATATCCGGATTCTCAACAATGGGTCCATGGCCACTGTGGCCCTAGACAAAAACTCAGGCTCTGGCTTGGTCTCTAATGGCAGATTCTACTATGGATTTTTCAGTGCTGCTATCAAGTTACCAGCTGGTCTATCTTCCGGAGTTGTAGTAGCCTTCTACTTGTCAAATGCAGATAAATTCCCTCACAACCATGATGAAATAGACATTGAACTACTTGGTCATGATAAGAGAAACGACTGGGTCATTCAAACAAACGTCTATGCCAATGGGAGTGTGAGCAcgggaagagaagagaaattctATCTCTGGTTCGACCCAACACAGCAATACCACTATTACAGCATCTTGTGGAACAATTATCACACAGTGTTTTTGGTGGACAATATTCCAGTCAGGGAGTTCATACATAGCAGCAAGTATCCTTCTGTGTATCCCTCAAAGCCAATGTCAGTATATGCCACAATCTGGGATGGATCAGAATGGGCCACCCATGGAGGAAAATATGGAGTTAATTATAAGTATGCACCATTTGTTGCTTCATTTGCAGAAATGGAATTAAATGGCTGCTTATCCAATCCGACAGCTCCAGCTTCTTCGTGTTCTAAGGCCACTACTTCTAGCTCAGACCCTGTGAATGGACCAGAGTTCACTAAGCTATCACAGCAGCAAATGGCAGCTATGGATTGGGCAAGAAGGAAACTCATGTTTTACTCCTACTGCAATGATAGACCAAGGTTCAAAGTTCTACCACCAGAATGCCACTG 935 0.431 MALIQQELLLSALLILCLTIEVSSHDRRFTVPSVTRLTDYFPRVPVDRAYSKAFGASNIRILNNGSMATVALDKNSGSGLVSNGRFYYGFFSAAIKLPAGLSSGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNVYANGSVSTGREEKFYLWFDPTQQYHYYSILWNNYHTVFLVDNIPVREFIHSSKYPSVYPSKPMSVYATIWDGSEWATHGGKYGVNYKYAPFVASFAEMELNGCLSNPTAPASSCSKATTSSSDPVNGPEFTKLSQQQMAAMDWARRKLMFYSYCNDRPRFKVLPPECH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01309 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 311 IPR044791 GO:0004553
Bva08g01309 311 Pfam Glycosyl hydrolases family 16 50 230 IPR000757 GO:0004553|GO:0005975
Bva08g01309 311 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 310 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Bva08g01309 311 PIRSF EndGlu_transf 7 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva08g01309 311 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 310 IPR013320 -
Bva08g01309 311 Gene3D - 32 310 - -
Bva08g01309 311 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 238 IPR000757 GO:0004553|GO:0005975
Bva08g01309 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 1 311 - -
Bva08g01309 311 CDD GH16_XET 47 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01309 Bva-Chr8 6855703 6857096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01309 11 311 Glycoside Hydrolase AT1G10550 61.639 1.94e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01309 K08235 - gmx:100778993 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01309 08 6855703 6857096 Bva08g01309 08 6855703 6857096 ECH