Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01308 ATGGCCGCAGAGACCGTCGTTGGGTCCACCGATTTACCCGTGAAGAGGCCGAGGGAAGATGAAGAGAATGGAGTCTCCATGGAGACCGAGAGTGTTAAACAGCCCGATTGTATATCCGCTGTTATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCACACTCCCTGAAGGTggaaaaaatcttatatcaaGGGAAGTCTGATTATCAAGATGTCATGGTCTTCCAGTCATCAACGTATGGCAAGGTTCTTGTTTTGGATGGAGTTATTCAGCTCACTGAAAGGGATGAGTGTGCCTATCAAGAAATGATCACTCATCTTCCTCTTTGCTCAATTCCAAATCCCAAAAAGGTCTTGGTTATCGGTGGAGGGGATGGTGGGGTCCTCCGAGAAGTATCTCGCCATTCTTCTGTTGAGAAGATAGACATTTGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAACAATTTTTCCCCGATGTTGCAGTAGGGTATGATGATCCACGTGTGACACTTCATGTTGGCGATGGAGTTGCATTTCTGAAGGCAGTTCCTGAAGGAGCTTATGATGCCGTCATAGTAGACTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAGGCGGAAAGTATATGGCTTCATATGCACATCATCGAGGACATTGTGGCAAATTGTCACCAGGTATTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACTTATCCAAGtGGGGTTATTGGTTTTATGCTCTGCTCTACTGAGGGGCCTGAGGTTGATTTCAAGCATCCGGTTAACCCTATAGACACACAAGATAATTCAGGAAGACCTTTAAGGTTTTACAACTCAGAGATTCATACTGCAGCGTTCTGTTTGCCATCGTTTGCTAGGAAAGTGATTGATTCTAAAGCAAATTG 995 0.4482 MAAETVVGSTDLPVKRPREDEENGVSMETESVKQPDCISAVIPGWFSEISPMWPGEAHSLKVEKILYQGKSDYQDVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGYDDPRVTLHVGDGVAFLKAVPEGAYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCHQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPEVDFKHPVNPIDTQDNSGRPLRFYNSEIHTAAFCLPSFARKVIDSKAN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01308 331 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 122 135 IPR030373 -
Bva08g01308 331 MobiDBLite consensus disorder prediction 1 30 - -
Bva08g01308 331 PANTHER SPERMIDINE SYNTHASE-RELATED 1 331 - -
Bva08g01308 331 TIGRFAM speE: spermidine synthase 45 321 IPR001045 GO:0003824
Bva08g01308 331 MobiDBLite consensus disorder prediction 13 27 - -
Bva08g01308 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 327 IPR029063 -
Bva08g01308 331 Pfam Spermine/spermidine synthase domain 101 288 - -
Bva08g01308 331 Hamap Polyamine aminopropyltransferase [speE]. 44 327 IPR001045 GO:0003824
Bva08g01308 331 PIRSF Spermidine_synth 33 331 IPR030668 GO:0006595
Bva08g01308 331 Pfam Spermidine synthase tetramerisation domain 44 98 IPR035246 -
Bva08g01308 331 Gene3D Spermidine synthase, tetramerisation domain 36 95 IPR037163 -
Bva08g01308 331 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 331 IPR001045 GO:0003824
Bva08g01308 331 CDD AdoMet_MTases 121 232 - -
Bva08g01308 331 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 43 280 IPR030374 -
Bva08g01308 331 Gene3D Vaccinia Virus protein VP39 96 331 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01308 Bva-Chr8 6846834 6850263 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01308 K00797 - fve:101311471 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01308 08 6846834 6850263 Bva08g01308 08 6846834 6850263 ECH