Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01300 ATGAACCCGTTCTCTTCAGGAACCCGTTTGAGGGACATGATACGTGCCATAAGAGCTTGCAAAACTGCAGCAGAAGAACGTGCTGTTGTAAGAAAAGAGTGTGCTGCCATTCGTGCTTCAATCAATGAAAATGATCAGGACTACAGGCACCGGAATCTGGCTAAGCTAATGTTCATCCACATGCTTGGCTACCCCACACATTTTGGTCAAATGGAGTGTCTCAAGTTGATTGCTTCTCCTGGATTTCCGGAGAAGAGAATTGGTTACCTTAGCCTCATGTTGCTTCTTGATGAAAGACAAGAAGTTCTTATGCTTGTTACGAACTCTTTGAAACAAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCACTTTGTGCTTTAGGGAACATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCAGAGGTTGAGAGATTGCTGCAATTTCGAGATCCAAATATTCGGAAGAAGGCAGCATTATGCTCTATAAGAATCATAAAGAAGGTTCCAGACTTGGCAGAGAATTTTATCAACCCTGCTGCTTCCCTAATTAAAGAGAAACATCATGGAGTTTTGATCACTGGGATTCGGCTCTGTACTGCTCTCTGTCAAATTAATTCAGAAGCCCTTGAATATTTTAGGAAGAAATGCACAGACAATTTGGTCAGAACTTTAAAGGATCTGGCAAACAGTCCTTATGCACCAGAGTACGACATTGCTGGAATTACAGACCCCTTTCTCCAAATAAGATTGCTTAAGCTTTTGCGTGTGTTGGGTGAAGGTGATGCTGACTCTAGTGATCTTATGAATGACATACTTGCTCAGGTGGCTACAAAGACTGAGTCAAATAAAGTTGCGGGAAATGCCATCTTATATGAGTGTGTCCAAACAATCATGAGCATTGAAGATAGTGGTGGCTTACGAGTTCTTGCCATCAACATTCTGGGAAGATTCTTGTCAAACCGTGACAATAATATCAGGTATGTAGCATTAAATATGCTGATGAAGGCTGTAACAGCTGATTCTCAGGCAGTGCAGAGGCACCGGGCAACAATTCTAGAGTGTGTAAAGGATTCAGATGCATCAATTCGGAAAAGAGCACTTGAACTTGTCTACATTCTGGTGAATGAAAGTAATGTGAAGCCCTTAACGAAAGAGCTTGTTGATTATCTGGAAGTCAGTGATCAAGATTTTAAAGGGGACCTTACTGCCAAAATTTGCTCTATTGTTGCAAAGTTTTCCCCCGAGAAGATCTGGTACATTGACCAGATGCTCAAGGTTTTGTCTGAGGCTggaaattttgtaaaagatgaaatatggCATGCCTTAATTGTTGTGATAACCAATGCTTCCGACCTTCATGGATATACTGCAAGGGCATTATACAGAGCATTCCAAACATCAGCAGAACAGgAAAGTCTTGTTCGAGTTGCGGTCTGGTGCATTGGAGAATATGGTGACATGTTAGTCAATAACATTGGAATGCTTGACATAGAAGAACCAATAACAGTGACTGAGTCAGATGCTGTTGATGTTGTGGAGATTGCTATAAAACGTCATGCATCAGATCTTACCACAAAAGCAATGGCTTTGGTTGCCTTGTTAAAACTCTCTTCACGTTTTCCTTCATGTTCAGAGAGGATCAAGGATATAGTTGTTCAGTACAAAGGGAACCTTGTGCTTGAATTGCAGCAAAGATCTATGGAATTCAACTCAATTATTGCAAAGCATCAAAATATTAGGTCTACGCTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAACTTTCATTGGAAGGAGGGCTGGTTCTATGTCAGGCACAGCTTCAATTCCAGCAGGACCTTCAGTTAATCTTCCAAATGGAGTTGCCAAAACTCCTGTGGCTCCTCTTGTAGATTTGCTTGATCTAAATTCAGATGACGCTCCTGCAACTAGCTCTTCTGGTGCTGATCTTCTTCATGACCTTCTCGGTGTTGATTTGTCACCGGCACCACAACAGCCTGGTTCTAATCAAGCTCCAAAAAGTGGCACAGATGTTCTTTTGGATCTTTTGTCAGTTGGATCACCTTCCGCACAAAGTAGCTCATCCACAACAGACATCTTATCTTCCAGTACTAATAACATAACACCAGTTTCACCGTTGGATGATCTGTCATCTCTTTCACTTTCTACGAGAGCAACTTCAAATGCTGGTGCTGCTCCTATGATGGATTTGATGGATGGATTTTCCGCAAGCCCGCCAACAGAAAACAATGGACCTGTTTATCCTTCTATAACTGCATTTGAGAGCAGCTCCTTGAGGGTGACCTTCAATTTCTCGAAACAACCAGGAAACCCACAAACAACAATTATCAAGGCTACCTTTACGAATTTGTCATCTAATGCATATACAGATTTTGTTTTCCAGGCAGCAGTTCCCAAGttTCTTCAATTGCAATTAGATCCGGCAAGCAGCAATACTCTTCCTGCTAGTGGTAATGGGTCCATCACACAAGAGCTCAAAGTTACTAATAGCCAACATGGAAAGAAATCTCTTATCATGCGCGTAAAGATAGCATACAAGATAAATGGCAAGGATACCTTGGAGGAAGGACAAATCAGTAATTTTCCTCGTGATTTATG 2627 0.4126 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRASINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLSLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPAASLIKEKHHGVLITGIRLCTALCQINSEALEYFRKKCTDNLVRTLKDLANSPYAPEYDIAGITDPFLQIRLLKLLRVLGEGDADSSDLMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDSGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAVTADSQAVQRHRATILECVKDSDASIRKRALELVYILVNESNVKPLTKELVDYLEVSDQDFKGDLTAKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVKDEIWHALIVVITNASDLHGYTARALYRAFQTSAEQESLVRVAVWCIGEYGDMLVNNIGMLDIEEPITVTESDAVDVVEIAIKRHASDLTTKAMALVALLKLSSRFPSCSERIKDIVVQYKGNLVLELQQRSMEFNSIIAKHQNIRSTLVERMPVLDEATFIGRRAGSMSGTASIPAGPSVNLPNGVAKTPVAPLVDLLDLNSDDAPATSSSGADLLHDLLGVDLSPAPQQPGSNQAPKSGTDVLLDLLSVGSPSAQSSSSTTDILSSSTNNITPVSPLDDLSSLSLSTRATSNAGAAPMMDLMDGFSASPPTENNGPVYPSITAFESSSLRVTFNFSKQPGNPQTTIIKATFTNLSSNAYTDFVFQAAVPKFLQLQLDPASSNTLPASGNGSITQELKVTNSQHGKKSLIMRVKIAYKINGKDTLEEGQISNFPRDL 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01300 875 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bva08g01300 875 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Bva08g01300 875 PIRSF AP1_gamma 6 875 IPR017107 GO:0005794|GO:0016192|GO:0030121
Bva08g01300 875 Gene3D - 2 594 IPR011989 -
Bva08g01300 875 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 875 - -
Bva08g01300 875 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 875 - -
Bva08g01300 875 Gene3D - 737 874 - -
Bva08g01300 875 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 755 872 IPR008153 -
Bva08g01300 875 SUPERFAMILY Clathrin adaptor appendage domain 733 874 IPR013041 -
Bva08g01300 875 SMART alpha_adaptinc2 752 872 IPR008152 GO:0006886|GO:0016192
Bva08g01300 875 MobiDBLite consensus disorder prediction 689 718 - -
Bva08g01300 875 Pfam Adaptin C-terminal domain 758 872 IPR008152 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01300 Bva-Chr8 6787059 6799646 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01300 K12391 - gmx:100802164 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01300 08 6787059 6799646 Bva08g01300 08 6787059 6799646 ECH