Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01297 ATGCTATGCACTCTAATCCATTTCCGCCGTTACGCTTCTTCTTCTGCCTCCTCGGCGTTCTCCCCTATCCCGCTGTATAGAGCTCTCCGCTTCTCTTGCTTCTCCTCCTCATCGCAACAGCCACTtgaagcagcagcagcagcaatgGTGGTTCATTCCAAAGACGAAGCTTACCTCCAAACCATCATTCCCAAGCGCATCCAACTCTTCGAGACCATCCAAGCGCAGCAAATCACTCATCGCCAATCTCTTCCTGCCGATCCCATTAAGATAACTTTGCCCAACAAGAATGTTAAGGAAGGCAAGAAGTGGGTGACAACGCCCTTAGATATTGCCATGGGGATTTCGAAGAGCTTGGGTGCGAATGCTTTAATTGCCAAGGTGAATGGAGTGTTGTGGGACATGTCGAGGCCATTGGAGGGTGATTGTGAGCTTcagattttcaaatttgaggaTGATGAAGGACGAGACACTTTCTGGCATTCAAGTGCTCACATTCTTGGGCAGGCGCTGGAGATGGAGTATGGATGCAAGCTTTGCATTGGGCCCTGTACCACTAGAGGAGAGGGATTCTATTACGATGCATTTTATGGTGACTTGAGTTTGAATGATGATCACTTTAAACAAATTGAGTCAGGGGCGTCAAAGGCCGCTGGGGAAAAACAACCCTTTGAACGCATTGAAGTGTCAAGGGATCAGGCTCTTGAGATGTTTTCCGATAATAAGTTTAAGGTTGAAATCATCAAAGATTTGCCTGCAGACAAGACTATAACAGTATACAGATGTGGTCCATTGGTTGACTTGTGTCGTGGACCACATATACCTAACACATCCTTTGTGAAAGCATTTGCATGTCAAAAAGCTTCGTCTGCATATTGGAGGGGGGATAAAGATCGGGAAAGCTTACAAAGAGTTTATGGAATATCTTTTCCTGATCAGAAGAGATTGAAGGAATATATCCACTTGTTGGAAGAGGCTAAGAAGTATGACCACAGGGTGCTAGGTGTTAAACAGGAGCTACTTTATCATCATGAATGGAGCCCTGGAAGTTGGTTTTTTCTCCCACATGGAACACGGATCTACAACAAATTAATGGAGTTTATACGAAATCAATATAGAGATAGAGGTTACCAAGAGGTTATATCTCCGAATATGTATAATATGGAACTTTGGCAACAATCTGGTCATGCTGCTAACTACAAAGAGAATATGTTTCTCTTGGAGATTGAAAAGCAAGAGTTTGGGCTGAAACCAATGAATTGTCCAGGGCACTGCTTGATGTTTAAACACAGAGTCCGCTCCTATAGAgAACTTCCTCTTCGATATGCTGATTTTGGGGTTTTGCACCGGAATGAGGCTAGTGGTGCTCTGAGTGGATTGACCCGTGTCAGGAGATTTCAACAGGATGATGCCCATATCTTCTGCAGAGAGTCTCAGGTAAAGGAAGAAGTGAGAAGCGCCTTGGATTTCATCAATTATGCCTACAAAATATTTGGTTTCACCTATGATCTGAAGCTTTCAACGAGGCCAGAGAATTACCTTGGAGATTTAGAAACATGGGAAAAGGCTGAAAATGCTCTCAAAGAAGCTTTAGATGAGTTTGGGAAGCCATGGCAGATAAATGAAGGGGATGGTGCATTCTATGGGCCAAAGATAGACATCACTGTATCTGATgcaatgaaaaggaaattccAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCGTTGCGTTTTAAGTTGGAGTACTCAGCGGAGGATGAAGCCAAAATTGAGAGGCCGGTTATGATACACAGAGCCATTCTGGGATCTGTTGAACGTATGTTTGCTATTCTGTTGGAGCATTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTGTGTGCCCTGTGTCAGAGAAATCACAGTCTTATGCATTGAAGGTGCGAGACCAAATCCATCAAGCAGGTTATCACGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTCCGAGAAGCTCAGTTAGCACAGTACAACTATATATTGGTCGTGGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGAGTTAGAGATAAATCTGACCATTCAGTGATGAGTGTGGAGAGCCTACTCAAACTCTTCAGTGATGAAGCTGCAGCTTACCATTG 2171 0.4307 MLCTLIHFRRYASSSASSAFSPIPLYRALRFSCFSSSSQQPLEAAAAAMVVHSKDEAYLQTIIPKRIQLFETIQAQQITHRQSLPADPIKITLPNKNVKEGKKWVTTPLDIAMGISKSLGANALIAKVNGVLWDMSRPLEGDCELQIFKFEDDEGRDTFWHSSAHILGQALEMEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNDDHFKQIESGASKAAGEKQPFERIEVSRDQALEMFSDNKFKVEIIKDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAFACQKASSAYWRGDKDRESLQRVYGISFPDQKRLKEYIHLLEEAKKYDHRVLGVKQELLYHHEWSPGSWFFLPHGTRIYNKLMEFIRNQYRDRGYQEVISPNMYNMELWQQSGHAANYKENMFLLEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRYADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKEEVRSALDFINYAYKIFGFTYDLKLSTRPENYLGDLETWEKAENALKEALDEFGKPWQINEGDGAFYGPKIDITVSDAMKRKFQCATLQLDFQLPLRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALKVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKSDHSVMSVESLLKLFSDEAAAYH 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01297 723 Gene3D - 152 310 - -
Bva08g01297 723 Hamap Threonine--tRNA ligase [thrS]. 154 721 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 SMART tRNA_SAD_4 257 306 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bva08g01297 723 TIGRFAM thrS: threonine--tRNA ligase 160 714 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 52 722 - -
Bva08g01297 723 Gene3D Bira Bifunctional Protein; Domain 2 312 619 IPR045864 -
Bva08g01297 723 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 355 621 IPR006195 -
Bva08g01297 723 CDD ThrRS_core 330 626 IPR033728 -
Bva08g01297 723 SUPERFAMILY Class II aaRS ABD-related 614 718 - -
Bva08g01297 723 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 408 616 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva08g01297 723 Gene3D - 87 149 IPR012675 -
Bva08g01297 723 Pfam TGS domain 89 149 IPR004095 -
Bva08g01297 723 PANTHER THREONINE-TRNA LIGASE 52 722 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 Pfam Anticodon binding domain 628 716 IPR004154 -
Bva08g01297 723 Gene3D - 620 723 IPR036621 -
Bva08g01297 723 CDD TGS_ThrRS 89 154 - -
Bva08g01297 723 PRINTS Threonyl-tRNA synthetase signature 621 633 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 PRINTS Threonyl-tRNA synthetase signature 416 444 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 PRINTS Threonyl-tRNA synthetase signature 449 472 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 PRINTS Threonyl-tRNA synthetase signature 594 607 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 PRINTS Threonyl-tRNA synthetase signature 550 578 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bva08g01297 723 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 257 306 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bva08g01297 723 ProSiteProfiles TGS domain profile. 87 149 IPR004095 -
Bva08g01297 723 SUPERFAMILY TGS-like 89 149 IPR012676 -
Bva08g01297 723 SUPERFAMILY ThrRS/AlaRS common domain 152 328 IPR018163 GO:0000166
Bva08g01297 723 CDD ThrRS_anticodon 626 715 - -
Bva08g01297 723 SUPERFAMILY Class II aaRS and biotin synthetases 330 613 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01297 Bva-Chr8 6762760 6770449 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01297 K01868 - gmx:100812652 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01297 08 6762760 6770449 Bva08g01297 08 6762760 6770449 ECH