Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01287 ATGTTGGGGGGCAACAACGGTAATCCTGTGCTTCCTGTTTACTTGGATGACtctcattttcattatcaaaCTAATGCCGCCAATCAATTGCAGTTGTTTGGAAATTTACAAGCTGGGTGTAGTGTTGATCCAGTTAACTACTTTGGAAATGAGCAGATCAGTCCCATGATTCGGCCAAATAAACGAGGCAGGGAAATGGAAGATATCTCAAACCAGCAAAAGCTTCAGATTTCCTTAAATTACAATGTCTGTCAAGATGATGCTGATCGATCAGCAAGCattccaaatccaaatcctGTGTCAACGGGGCTGCGGCTAtcatatgatgatgatgagcgTAACTCATCTGTGACTTCTGCAAGTGGTAGTATGGCCACTGCACCTTCAATTATATTATCCCTTGGTGACAACATTAGGACAGAACTTGATAGGCAGAAAGAAGAACTAGATCAGTATATTAAGCTTCAGAAGGAGCAAATTGCCAAAGGGGTGAGAGACATGAAACAAAAACACATGGCTTCTCTCCTTGCATCAATTGAGAAAGGTGTCAGCAAGAAGCTAAAGGAAAAAGATGTGGAGATAGAGAACATGAACCGTAAAAATAAGGAGCTAGCAGAGAGAATAAAGCAGGTGGCCTTGGAAGCACAAAACTGGCATTACAGAGCAAAGTATAACGAGTCAGTTGTCAATGTGCTTAAAAACAATCTCCAGCAGGCAATCTCACAAGGAGTTGAACAAGGGAAAGAAGGGTTTGGAGACAGTGAACTTGATGATGCTGCCTCATATATCGATCCCAACAACTTCCTGAGCATCCCTGGTGCGTCTGTGAAATCTGCTTCCAAGAACAACCAAGGCATGGAGCATCTGATTTGCAGGGCGTGCAAGGTAAAGGAGGTTTCCATGTTGTTGATGCCTTGTAGGCATCTATGCTTGTGTACGGATTGTGATGGATTAATCAATGTTTGTCCTGTATGCCAAATGATAAAAACTGCTAGTGTCCAAGTGTATCTGTCTTA 1016 0.4055 MLGGNNGNPVLPVYLDDSHFHYQTNAANQLQLFGNLQAGCSVDPVNYFGNEQISPMIRPNKRGREMEDISNQQKLQISLNYNVCQDDADRSASIPNPNPVSTGLRLSYDDDERNSSVTSASGSMATAPSIILSLGDNIRTELDRQKEELDQYIKLQKEQIAKGVRDMKQKHMASLLASIEKGVSKKLKEKDVEIENMNRKNKELAERIKQVALEAQNWHYRAKYNESVVNVLKNNLQQAISQGVEQGKEGFGDSELDDAASYIDPNNFLSIPGASVKSASKNNQGMEHLICRACKVKEVSMLLMPCRHLCLCTDCDGLINVCPVCQMIKTASVQVYLS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01287 338 Coils Coil 187 214 - -
Bva08g01287 338 Pfam Zinc finger, C3HC4 type (RING finger) 289 326 - -
Bva08g01287 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 338 IPR013083 -
Bva08g01287 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Bva08g01287 338 MobiDBLite consensus disorder prediction 88 103 - -
Bva08g01287 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 337 IPR017066 -
Bva08g01287 338 Coils Coil 139 162 - -
Bva08g01287 338 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 337 - -
Bva08g01287 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Bva08g01287 338 MobiDBLite consensus disorder prediction 88 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01287 Bva-Chr8 6724446 6727299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01287 290 326 Miscellaneous Gene Families AT2G21380 40.541 1.00e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01287 K19042 - mnt:21410357 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01287 08 6724446 6727299 Bva08g01287 08 6724446 6727299 ECH