Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01270 atgaagagaaacagaagttgttctcttctctttctcctgTTCTTGGTGGTCATTGTCTTTGTCACATTCTCTATAATTTCTGTCGAGGCGAGGAAGAACCACCATACTAAGAACACAAAATctcataaacataaaaaagatggAAACAATGGCCATGCTCGAGGCTCACATTCTCCTAGTCCTGCACCAGCTCCTCTTCCTCCTTATGCTTCTCCTTTAACCCGAATGACCACTTTCGATGTCATGTCTTTTGGAGCAAAGGGTGCTGGCTTTTCTGATGACTCAAAGGCACTTCTTGCAGCATGGAAAGCTGCCTGCAAAGTTGCTGGTGCTACCGTGAAAATTCCAGCAGGACTCAAGTTTTTCATTATGCCCATTACCTTACAAGGCCCTTGTATGCCTGGCCTTACTCTTCAGATAGATGGAACACTACTTGCTCCTCCTGAAACACATTCCTGGACAAGACTTACTTTGTTTCAGTGGATAAATTTCAAATGGGTTCACAACTTCACCATCAAAGGCTCAGGCACTGTCAATGGCCAAGGCTCCAACTGGTGGAGCACTTCACAAGTTTATTATATGCAGAAGAGAAATTCTAAGTACATTCCGGACATCAAACCAACTGCTATAAGATTCTACTCCAGCAGTGATATAACAGTTCGCGATATCAGAATCATTAACAGTCCTCTATGCCATCTAAAATTTGACAGTTCAAAGGGAATTAAAGTCAATAACATAACAATTTCTTCCCCAGAGAACAGCCCAAACACTGATGGCATTCACCTGCAGAATACACAGGATGTGGAGATTCAACATTCTCATATTGGAAGTGGAGATGACTGTGTATCCATCCAGACAGGTTGCTCTAACGTGCATGTTCACAATATTAATTGTGGCCCCGGCCATGGTAtaagCTTGGGAGGATTAGGGAAAGATAGAAGTGTAGCATGTGTCTCCAACATCATGATTGAGGATGTTGTGATGCAGAACACTCTATATGGTGTACGGATCAAAACATGGCAGGGAGGCATTGGAACGGTTAAGAATGTGTCATTTTCCAGAATCCAAGTACATGATGTGAAGGTTCCAATAGTGATAGACCAATTCTACTGCGACAAACATATCTGCAAGAACCAGACAGGAACCGTGGTGATTTCGGGCGTCAGATTTGATCAAATTAGTGGGACTTATGCAGTGCAGCCTATTCATCTAGCTTGCAGCAACTCCATTCCCTGCACTGATGTAGATCTTACTGATATCCAGCTCAGTCCCTCTGTCAACCATAGAGGTTTTCAGCAAGCTGTGTGTTGGAACTCTTATGGGAAGTCAACAGGCCCCTTGCTACCTTCAAGCATTGATTATTGCTTGAGAAGTGGTGGTGGTTTAATCAAGAGAATAGCAAGGTCACATGATCATGGCTTGTGCTACTA 1430 0.4154 MKRNRSCSLLFLLFLVVIVFVTFSIISVEARKNHHTKNTKSHKHKKDGNNGHARGSHSPSPAPAPLPPYASPLTRMTTFDVMSFGAKGAGFSDDSKALLAAWKAACKVAGATVKIPAGLKFFIMPITLQGPCMPGLTLQIDGTLLAPPETHSWTRLTLFQWINFKWVHNFTIKGSGTVNGQGSNWWSTSQVYYMQKRNSKYIPDIKPTAIRFYSSSDITVRDIRIINSPLCHLKFDSSKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQHSHIGSGDDCVSIQTGCSNVHVHNINCGPGHGISLGGLGKDRSVACVSNIMIEDVVMQNTLYGVRIKTWQGGIGTVKNVSFSRIQVHDVKVPIVIDQFYCDKHICKNQTGTVVISGVRFDQISGTYAVQPIHLACSNSIPCTDVDLTDIQLSPSVNHRGFQQAVCWNSYGKSTGPLLPSSIDYCLRSGGGLIKRIARSHDHGLCY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01270 476 Gene3D - 70 453 IPR012334 -
Bva08g01270 476 PANTHER - 15 463 - -
Bva08g01270 476 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 15 463 - -
Bva08g01270 476 MobiDBLite consensus disorder prediction 34 67 - -
Bva08g01270 476 SUPERFAMILY Pectin lyase-like 69 452 IPR011050 -
Bva08g01270 476 MobiDBLite consensus disorder prediction 35 50 - -
Bva08g01270 476 Pfam Glycosyl hydrolases family 28 111 424 IPR000743 GO:0004650|GO:0005975
Bva08g01270 476 SMART pbh1 288 308 IPR006626 -
Bva08g01270 476 SMART pbh1 318 339 IPR006626 -
Bva08g01270 476 SMART pbh1 347 368 IPR006626 -
Bva08g01270 476 SMART pbh1 265 286 IPR006626 -
Bva08g01270 476 SMART pbh1 238 264 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01270 Bva-Chr8 6636474 6638814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01270 1 471 Glycoside Hydrolase AT3G26610 61.378 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01270 K01213 - gmx:100803027 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01270 08 6636474 6638814 Bva08g01270 08 6636474 6638814 ECH