Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01238 atggatccCAATCCCGATCATTTCCCACTTATCTGCTTTGTCTTGAACCAGCTTGATCCCCACGTCTATCCTCCCCTACCAAAGCAACTAGAACCAACCCTGCTTGCCCACTTCCCTCATTTGTTTCACCCCAAAGTCTTAAACGACTTGATCCAACTCATCCCTCAGCTCAATATCACTCAGACCTTGTCTCTTCTTCGATTCCTCGGGCCCCGCCAAGACCCTTCTTCCGTTGCTGCTGCGCTGGCCAAGATCGCAGAAATCCAATCCAATCTCGCGGTTATCGATGATGATGGTACTGGTGATAGGGAGAGAACGGAGGAGCTGAAAAAGGCGGCTCAGATGTATGAGACTGTGGTCAGATTGGACGATATGCATGAGGAGTACGAGAAGAAGTTGAGGGATGCTGAGCAGAGCTTGGTTGAGGCTTATGGCGCGGCGGCGCATCCGTTGCAAGGGTTTCACTATGAAGTGAATGAAGAAGTTATTGAAATCTTGAGCAAAGCGGAGAAAGAACAAGTGGAAAGGGTCGAACTTTCTGGTCGTCAGTTAAGGCTTCTTCCTGACGCTTTTGGAAAGCTTCGTGGCTTGCTTGTGCTTAACTTGTCTCGTAAACAGTTACAGGTGATTCCTGATTCAATAGCAGGGCTACAAAAACTTGAGGAACTTGACATTTCATCCAATCTTTTAGTGTCTCTACCCGACTCCATTGGGTTGCTGATTAATCTGAGGGTTCTTAATGTGTCGGGAAACAAGTTAGATGCTCTTCCTGAAGCCATTGCTCACTGCAgGTCACTGGTTGCATTGGATGCAAGCTTTAACAATCTAATGTGTCTGCCAACTAACATGGGCTGTGGACTCATTAATCTTGAGAAGCTCTTGATCCATTTGAATAAGATTCGCCTACTTCCCCCGTCTATAGGGGAAATGAGGTCTCTCAGATACCTTGATGCTCATTTCAACGAGCTCCGCGGCCTACCTCATTCAATTGGGAGACTAACAAATCTTGAATATCTAAACCTTGGCAGCAACTTCAGTGATTTGACAGAACTTCCTGAAACATTTGGTGATTTGGTTAACCTAAGGGAGCTGGACGTCAGCAACAATCAGATTCATGCTCTTCCCTACACTTTTGGTCGGTTAGAAAGATTAGCAAAGTTGAACCTAGAAGAAAATCCAATCATAATTCCCCCACAGGAGGTTGTAGACCAGGGGGTTGAAGCTGTCAAGGAGTTCATGGCTAAGTGGTGGGTTCAGGTCATCGCAGAAGAACAACAGAAAAGCACGCATGAAGCAGAAACCGGGCAAGCACAGATTGGATGGCTGGGGTGGGGAACCTCTTTGTTAAAGAATGCTGTTTCTGGGGTCTCTGGAACTGTTACAGAATATTTTGGCGCCAGAAAAGCATATAGGGATCCATGGATGGATCAACAATTGTG 1439 0.4607 MDPNPDHFPLICFVLNQLDPHVYPPLPKQLEPTLLAHFPHLFHPKVLNDLIQLIPQLNITQTLSLLRFLGPRQDPSSVAAALAKIAEIQSNLAVIDDDGTGDRERTEELKKAAQMYETVVRLDDMHEEYEKKLRDAEQSLVEAYGAAAHPLQGFHYEVNEEVIEILSKAEKEQVERVELSGRQLRLLPDAFGKLRGLLVLNLSRKQLQVIPDSIAGLQKLEELDISSNLLVSLPDSIGLLINLRVLNVSGNKLDALPEAIAHCRSLVALDASFNNLMCLPTNMGCGLINLEKLLIHLNKIRLLPPSIGEMRSLRYLDAHFNELRGLPHSIGRLTNLEYLNLGSNFSDLTELPETFGDLVNLRELDVSNNQIHALPYTFGRLERLAKLNLEENPIIIPPQEVVDQGVEAVKEFMAKWWVQVIAEEQQKSTHEAETGQAQIGWLGWGTSLLKNAVSGVSGTVTEYFGARKAYRDPWMDQQL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01238 479 Coils Coil 119 146 - -
Bva08g01238 479 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 3 6 474 - -
Bva08g01238 479 SUPERFAMILY L domain-like 170 398 - -
Bva08g01238 479 PANTHER LEUCINE-RICH REPEAT-CONTAINING 6 474 - -
Bva08g01238 479 Pfam Leucine rich repeat 352 394 IPR001611 GO:0005515
Bva08g01238 479 Pfam Leucine rich repeat 219 276 IPR001611 GO:0005515
Bva08g01238 479 ProSiteProfiles Leucine-rich repeat profile. 219 240 IPR001611 GO:0005515
Bva08g01238 479 SMART LRR_bac_2 310 329 - -
Bva08g01238 479 SMART LRR_bac_2 217 236 - -
Bva08g01238 479 SMART LRR_bac_2 240 259 - -
Bva08g01238 479 SMART LRR_bac_2 333 354 - -
Bva08g01238 479 SMART LRR_bac_2 358 377 - -
Bva08g01238 479 SMART LRR_bac_2 263 282 - -
Bva08g01238 479 SMART LRR_typ_2 358 380 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 194 216 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 240 263 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 333 357 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 217 239 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 287 308 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 264 286 IPR003591 -
Bva08g01238 479 SMART LRR_typ_2 310 332 IPR003591 -
Bva08g01238 479 Gene3D Ribonuclease Inhibitor 105 278 IPR032675 -
Bva08g01238 479 Gene3D Ribonuclease Inhibitor 279 440 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01238 Bva-Chr8 6445687 6448288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01238 187 399 Receptor kinase-like Gene Family AT5G56040 30.631 2.02e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01238 - - gmx:100797180 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01238 08 6445687 6448288 Bva08g01238 08 6445687 6448288 ECH