Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01200 ATGGCTTTTTCTGGCACTTCTGTAAAGCCAAGTCAATCTCTCCTTCCACGCCACAGAGCTCCAGTCCCAAGCCATGGTTGCAGGAAACAGTTCTATTTGAGAGCTTCAGCGACTAGTTCAGGAGATGGAGATGGAGAGAGGACAATTATAAGGAAAGAAACAGATGGATGGAAGATCAATTACTCGGACCAAAAACCAGCAACCCCATTGCTAGATACTGTCAATTACCCTGTTCATATGAAGAATCTATCCACACAGGATCTTGAACAACTTGCAGCAGAACTAAGGGCAGAGATAGTGTACTCTGTATCGAAAACTGGTGGCCATCTTAGCTCAAGTTTAGGAGTAGTGGAGCTATCAGTCGCTCTGCATCATGTTTTCAACACCCCAGATGACAAAATCATATGGGATGTGGGACACCAGGCATACCCACACAAGATTCTCACTGGTCGAAGATCCAGAATGCACACCATTAGGAAAACTTCAGGGCTAGCCGGGTTTCCTAAAAGGGACGAGAGCGTTCATGATGCTTTCGGGGCAGGGCACAGTTCAACCAGTATATCTGCTGGCCTTGGCATGGCAGTTGCAAGGGATttattggggaaaaaaaacaatgtcATTTCGGTGATTGGAGATGGGGCAATGACTGCAGGTCAAGCATATGAAGCCATGAACAATGCAGGATACCTTGATGCTAACTTGATAGTTATACTTAATGACAACAAGCAAGTCTCTTTACCAACTGCTACACTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTGCTTTAAGCAAGATTCAAGCAAGCACCAAATTCCGCAAATTCAGAGAAGCTGCTAAAagCATCACCAAACATATGGGAGAGCAAACGCATCAAATTGCAGCAAAAGTAGACGAGTATGCAAGAGGAATAATCAGCGCTTCGGGGTCTACACTCTTTGAGGAGCTTGGCTTATATTATATCGGTCCCGTGGATGGTCATAATATTGAAGATCTGGTCACCATTCTCCAACAAGTGAAAGCACTACCTGTCCCAGGTCCAGTTTTGATTCACATAGTGacagagaaaggaaaggggTACCCCCCAGCAGAAGCAGCTGCTGACAGAATGCATGGTGTTGTCAAGTTTGACCCTAAAACAGGGGGGCAGTTTAAGTCAAAATCCTCAACCCTCTCATATACCCAGTACTTCGCTGAATCTTTAATAAAAGAAGCCGAAGTGGACAACAAGATAGTAGCCATTCATGCAGCAATGGGTGGCGGGACTGgtctaaattattttcagaaGAAGTTCCCAGATCGCTGCTTTGATGTGGGGATAGCTGAGCAACATGCCATTACATTTGCAGCTGGGTTAGCTACAGAGGGTCTCAAGCCATTCTGTGCCATCTATTCAACATTCCTGCAGCGTGGATATGATCAGGTGGTACACGACGTGGATCTTCAGAAACTGCCTGTCCGTTTTGCCATGGATAGAGCTGGTTTGGTTGGCGCAGATGGACCAACCCACTGCGGAGCATTTGATATCACATACATGGCTTGCTTGCCCAACATGGTGGTCATGGCACCATCTGATGAAGCTGAACTTATGCATATGGTTGCAACAGCAGCAGCCATAGATGACAGACCAAGTTGCTTTAGATTTCCAAGGGGCAATGGAATTGGAGCAGTTCTGCCTCCTAATAACAAAGGAACCCCACTTGAGATAGGAAAGGGCAGAGTACTAATTGAAGGCACCAGAGTTGCTCTTTTGGGATATGGTTCTGTAGTTCAACGATGCCTAGAAGCAGCAACAATGCTCAAAACACAAGACATTTCAGTGACGGTTGCCGATGCCAGGTTTTGCAAACCTCTGGATATTGATCTCATTAAGCAACTAGCCAAGGAACACGAAATTCTCATTACAGTGGAAGAGGGTTCTATTGGAGGTTTTGGATCTCACGTATCACAGTACCTAAGTTTGTCCGGTCTTCTGGATGGACCACTCAAGTGGAGAGCAATGATGCTTCCTGATAGATACATTGAGCATGGGTCACCCCTAGATCAGCTTGAAGAATCAGGACTTTCTTCCAATCATATTGCTGCAACAGTCTTGTCCATTTTGGAGAAACCTAAAGAGGCTTTTCTGTTAATGTA 2141 0.4451 MAFSGTSVKPSQSLLPRHRAPVPSHGCRKQFYLRASATSSGDGDGERTIIRKETDGWKINYSDQKPATPLLDTVNYPVHMKNLSTQDLEQLAAELRAEIVYSVSKTGGHLSSSLGVVELSVALHHVFNTPDDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGAGHSSTSISAGLGMAVARDLLGKKNNVISVIGDGAMTAGQAYEAMNNAGYLDANLIVILNDNKQVSLPTATLDGPATPVGALSSALSKIQASTKFRKFREAAKSITKHMGEQTHQIAAKVDEYARGIISASGSTLFEELGLYYIGPVDGHNIEDLVTILQQVKALPVPGPVLIHIVTEKGKGYPPAEAAADRMHGVVKFDPKTGGQFKSKSSTLSYTQYFAESLIKEAEVDNKIVAIHAAMGGGTGLNYFQKKFPDRCFDVGIAEQHAITFAAGLATEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRVLIEGTRVALLGYGSVVQRCLEAATMLKTQDISVTVADARFCKPLDIDLIKQLAKEHEILITVEEGSIGGFGSHVSQYLSLSGLLDGPLKWRAMMLPDRYIEHGSPLDQLEESGLSSNHIAATVLSILEKPKEAFLLM 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01200 713 CDD TPP_DXS 107 362 IPR005477 GO:0008661|GO:0016114
Bva08g01200 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 455 IPR029061 -
Bva08g01200 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 711 IPR005477 GO:0008661|GO:0016114
Bva08g01200 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 704 IPR005477 GO:0008661|GO:0016114
Bva08g01200 713 Pfam Transketolase, C-terminal domain 572 695 IPR033248 -
Bva08g01200 713 Gene3D - 63 365 - -
Bva08g01200 713 SUPERFAMILY TK C-terminal domain-like 567 703 IPR009014 GO:0003824
Bva08g01200 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 356 IPR005477 GO:0008661|GO:0016114
Bva08g01200 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 390 581 IPR029061 -
Bva08g01200 713 Gene3D - 572 704 IPR009014 GO:0003824
Bva08g01200 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Bva08g01200 713 Gene3D - 393 559 - -
Bva08g01200 713 MobiDBLite consensus disorder prediction 1 24 - -
Bva08g01200 713 CDD TPP_PYR_DXS_TK_like 399 552 - -
Bva08g01200 713 SMART Transket_pyr_3 393 558 IPR005475 -
Bva08g01200 713 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 73 703 IPR005477 GO:0008661|GO:0016114
Bva08g01200 713 ProSitePatterns Transketolase signature 2. 499 515 IPR020826 -
Bva08g01200 713 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01200 Bva-Chr8 6217390 6220719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01200 435 651 Acyl Lipid Metabolism Gene Families AT1G55510 24.034 6.93e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01200 K01662 - gmx:100798930 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01200 08 6217390 6220719 Bva08g01200 08 6217390 6220719 ECH