Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01161 ATGGAGTCTCAACCTCCTATAGAGATCGACCCTCCTCAAATCCTGCAATCATTACAATCAGATTCAGTTCTTGCGAAGAAACCCTTTGATGGTGCATCACAATATCCACCGCTAGTTCCTGTTTCTGAAGAAACCTTTCCCGGCTCATCACCTCGTTCAAATTTCGAAACCCTAGATGACGCTTCTTTGGTTCCGACTAATGAGATGGGTTCTTCACTTTCTTTACCTACGGAAGACCAAGATGACCAGAGTCTTTCTCTTTCGCCGTCCAAGATGGATGTCTCTTTTCCCAGTTCACTTCCCACATCCCTAGATGGCAATCCTTTGTTCTCCCAATTCACCAGACGAATCCTAGGCGAGTCTTTATCATCTGCATCAGAAGAAATTCCAAATGATGATGATCCACTTTTGCCTTTGGTACCTCAGTCATCTACTGCAGATGGGTTTTCAACGCCTAAGCCAACGGCGGCTAATGATAATTATTACTCTGCGCAGTGTGATTCCGGTAGAGGAGCTCAAGAGGGTCCAGAGCATTCTTCTCCGTACAAGTTAAATGGCGTATCGGATTATTCGGTTCCGAATTGGTCTTCCCACTCCACGGAGGACTTGTCATCTTCCGAAGAGTGGCTTTCGTCGTCTTCATCTTCTGCTGGGCATTTTAAAGAAGAATGGGATTCGGGGTTTACTCATGAAGCAAGTTTGCTGCCTTCTGAAGACACCAGGGTACGTTCGACAAATGCGTTTTCTTCCTCCTCAATTGTACCTTCTATGTTGGGGGGCGGGCTTGCAAATCTTGGTAACACATGCTTTATCAATGCTATACTTCAATGCTTTACTCACACAGTGCCACTAATCCTGGGTCTTTGTTCTTGCAGTCATTCTGTCCCTTGTGATAATGATACTGATGGGTTCTGTGTTCTGTGCGGTCTCAGTGACCACATTAGACAGACATTAGCGGCCTCAGGAAAAGTTCTTTCACCTTGGAGTTTTGTCAACAATTTGAATCaattttcatcttcttttagAAGGTATCAGCAGGAAGATGCCCATGAATTTATGCAGTGCGTCTTAGATAAATTGGATAAGTGTTTTGTagatttgaagaagaagaaccaaaGTTGTGAACAAGATTGCAATCTTGTAGAAAAAGTATTTGGAGGTCGTCTCATTAGCAAACTTCGATGTTGTAACTGTGGCCACTGTTCTGAAACTTATGAGCCTCTGATTGACCTGAGTTTAGGAATCCAAGATGTGGATAACCTTCCAAGCGCTCTGGAATCTTTCACAAAGGTGGAGACTCTTGATGCAAAGTTTATATGTGATGGCTGCAAAGGAGAAGTATCCATGGAGAAGCAGTTTATGTTGGACCAGGTTCCTTCCGTTGCAGCATTGCACTTAAAGAGATTTGAGACGTATGGGAGCTCTGTTGAAAAGATTGATAAGCACGTTGATTTCCCAATGGAGTTGGACTTGCAGCCTTACACCATCTCTAGTCAGGACTATAATGttgaattgaaatataatCTATACGCAATTGTCGTGCATACTGGATTTTCATTGACTTCTGGGCATTACTTTTGCCTTGTTCGCTCTGCTCCGGACATGTGGCATAGGTTGGACGATTCAGAGGTTACCAGCGTCCAAGGAGACTACGTGCAGTCTCAGGAGGcgtacatattattttatgcaaaaCAAAGTACACCCTGGTTTTCAAGTATTATGGAAGATTCGCGGCTATGCTTGGATCCCAGCATTTTGAGTACATCTCCAAAATCAGTTTTAGACGCTGCCGACAGTTTGTGTAATTCACATTCTAGCGAAACTAATATCGTAAGTGGTAGTGATACCAAAAATTTTCCTGAGGCGTTGTCCGATTATTCTTTTGGAGGAAGATCTGATGCACTTGAGGTTGATGATATTGTAGATGCTTATGGCCCTGGACAATTTCCCTCTAGATTAAATCAGGAAAACGCTGGTCATAATGGCTCTAGACATGTTACCACGCATACTCAGATGCCATGTCGAAGTAATGTCATCTCTAATGGAAATTCATGCAATGAGAAAAATGGTACTCTATCCAGTCCCGATCAATACATTTACCGCCAGGAGGTTGTAAATATTAGAGAGGATGGTGGTTTCCATCCTTTAACTCCTCTCAGTTCCCCTAGTCCAGATGCATATTCTCCAGATATGAATTATTACATAACACGTAATCATTTGAAGATGGAGGATCATGACAGCCATAAGAGACCATTTAATAAGTCGACGGAAGATAGTAAGAGAAAAGAAGCCATAAAATATGCTGCCAAGAGTATGCCTGTTTCTAGGAGGAGGAAACTTTTGGATGCGATGATGGGACCACTTAGTGAGGGTTCtttaaacaagagaagaaaaagaatggatTTATCACTGTGTAAGAAAGGCAGCCCTCCTAGGGTTGGCAAAAAATCTAACCATGTTTCTGTCGTGCAAGGCCCCGTGATggcttg 2489 0.4154 MESQPPIEIDPPQILQSLQSDSVLAKKPFDGASQYPPLVPVSEETFPGSSPRSNFETLDDASLVPTNEMGSSLSLPTEDQDDQSLSLSPSKMDVSFPSSLPTSLDGNPLFSQFTRRILGESLSSASEEIPNDDDPLLPLVPQSSTADGFSTPKPTAANDNYYSAQCDSGRGAQEGPEHSSPYKLNGVSDYSVPNWSSHSTEDLSSSEEWLSSSSSSAGHFKEEWDSGFTHEASLLPSEDTRVRSTNAFSSSSIVPSMLGGGLANLGNTCFINAILQCFTHTVPLILGLCSCSHSVPCDNDTDGFCVLCGLSDHIRQTLAASGKVLSPWSFVNNLNQFSSSFRRYQQEDAHEFMQCVLDKLDKCFVDLKKKNQSCEQDCNLVEKVFGGRLISKLRCCNCGHCSETYEPLIDLSLGIQDVDNLPSALESFTKVETLDAKFICDGCKGEVSMEKQFMLDQVPSVAALHLKRFETYGSSVEKIDKHVDFPMELDLQPYTISSQDYNVELKYNLYAIVVHTGFSLTSGHYFCLVRSAPDMWHRLDDSEVTSVQGDYVQSQEAYILFYAKQSTPWFSSIMEDSRLCLDPSILSTSPKSVLDAADSLCNSHSSETNIVSGSDTKNFPEALSDYSFGGRSDALEVDDIVDAYGPGQFPSRLNQENAGHNGSRHVTTHTQMPCRSNVISNGNSCNEKNGTLSSPDQYIYRQEVVNIREDGGFHPLTPLSSPSPDAYSPDMNYYITRNHLKMEDHDSHKRPFNKSTEDSKRKEAIKYAAKSMPVSRRRKLLDAMMGPLSEGSLNKRRKRMDLSLCKKGSPPRVGKKSNHVSVVQGPVMA 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01161 829 MobiDBLite consensus disorder prediction 805 829 - -
Bva08g01161 829 MobiDBLite consensus disorder prediction 124 184 - -
Bva08g01161 829 MobiDBLite consensus disorder prediction 46 100 - -
Bva08g01161 829 Pfam Ubiquitin carboxyl-terminal hydrolase 261 562 IPR001394 GO:0004843|GO:0016579
Bva08g01161 829 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 239 798 - -
Bva08g01161 829 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 239 798 - -
Bva08g01161 829 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 261 276 IPR018200 GO:0004843|GO:0006511
Bva08g01161 829 MobiDBLite consensus disorder prediction 143 167 - -
Bva08g01161 829 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 507 525 IPR018200 GO:0004843|GO:0006511
Bva08g01161 829 Gene3D Cysteine proteinases 259 571 - -
Bva08g01161 829 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 260 565 IPR028889 -
Bva08g01161 829 MobiDBLite consensus disorder prediction 25 100 - -
Bva08g01161 829 SUPERFAMILY Cysteine proteinases 261 564 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01161 Bva-Chr8 5950162 5954160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01161 255 564 Miscellaneous Gene Families AT4G31670 33.856 6.80e-47 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01161 K11855 - qsu:112012452 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01161 08 5950162 5954160 Bva08g01161 08 5950162 5954160 ECH