Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01015 ATGGAGACCATGGCTGAAAACCCCAGTGGACTCAAATACCCTCCCAAAAGCATACCCTCGAACACCCCTAAAAAGCGAAGTCGAACTCCGAACCCCCTTCAATTCCCATCCTACCTTCGCGAAGCGAATATTTCATCCTCGGGCAGAATCATCTGCGATATCCTTGCTCAGACGTCATCGGATGATATTGAATCTTCACTCTCGTCCACTGGAATCCACCCTTCTCCCGAAATTGTCCATGAAGTTCTTAAAGTCTCCTACGATTACCCTTCTTCTGCTGTGAAGTTTTTTCGCTGGGCCGGGCGGTTGCAGAAGCACTCGGCATATGGGTGGAACTTGATGGTTGATCTGCTTGGTAAGAACCATCTCTTTGAACCCATGTGGGATGCAATTCGATCAATGAAGAAGGAAGGGGTACTTTCCGTAGCCACATTTGTGTCAGTTTTCGGGAGTTACTGTACGGCTGGTAGGTTTGACGAGGCTGTGATGAGCTTTGATGTGCTGGATAGACATGGGATTCGGCAAGACATTATTGCAGTAAATTCTCTATTAAGTGCAATTTGCCGCGAATATAATCAAACTTCAAGGGCATTAGAATTCTTTGAAAAGATTAGAGAGAAGATACCTCCAGATGGTGACACATTTGCCATTTTTTTGGAAGGGTGGGAAAAAGAAGGCAATGCAGCAAAAGCCAAGAGCACTTTTGGTGAGATGGTGGTTCAAATTGGATGGAGTCCACAGAATGTCTCAGCCTATGATGCCTTCTTGAGAACTCTTGTCAGTGAGCTGCAGATAGATGAGGCCATCAAGTTTCTGAAAGTCATGAAGGACCATAACTGCTTTCCAAGTTTGAAATTCTTTACCGTTGCTCTTGAGATTATGGTCAAGCAAAATGATTCGGTTAATGCTATCCCCCTGTGGAATATAATGATGGGTAGTGGTGTTGTGCCCAACTTGGTAATGTACAACGCCATGATTGGCTTGCTCTGCAGCAATAACGAGATTGATCATGCATTTCAGCTGCTTGATCAGATGGTCTTCCAAGGTGCTTTTCCTGACTCCTTAACTTATAACATGATTTTTGAATGTTTGGTGAAGAACAAAAGGGTTCGTGAAACTGGGAGGTTCTTTACTGAGATGATCAAGAATGAGTGGCCACCAACACATTCCAATAGTGCTGCCGCCATCACAATGTTGTTTGATTGTGATGACCCTGAAGCAGCACATGAAATTTGGACTTATATGCTTGAAAATCACGTCAAGCCACTAGATGAAAGTGCAAATGCATTGCTTATTGGTCTTTCTAACTTAGGTAGGTTATCAGAGTTGAGAAGGTCTGCTGAAGAAATGCTCGATggaaagatcaaaatatatgaaatgacAATGATGAAGTTGAGGGATGCTTTCTATAAAGAAGGCAGCAGAAGTGCAAGGGATAGATATGATAATCTTTCTAGGAGGTGGAAAGCTCGAAATCTAGAACTTACTCGTTTGTG 1496 0.4278 METMAENPSGLKYPPKSIPSNTPKKRSRTPNPLQFPSYLREANISSSGRIICDILAQTSSDDIESSLSSTGIHPSPEIVHEVLKVSYDYPSSAVKFFRWAGRLQKHSAYGWNLMVDLLGKNHLFEPMWDAIRSMKKEGVLSVATFVSVFGSYCTAGRFDEAVMSFDVLDRHGIRQDIIAVNSLLSAICREYNQTSRALEFFEKIREKIPPDGDTFAIFLEGWEKEGNAAKAKSTFGEMVVQIGWSPQNVSAYDAFLRTLVSELQIDEAIKFLKVMKDHNCFPSLKFFTVALEIMVKQNDSVNAIPLWNIMMGSGVVPNLVMYNAMIGLLCSNNEIDHAFQLLDQMVFQGAFPDSLTYNMIFECLVKNKRVRETGRFFTEMIKNEWPPTHSNSAAAITMLFDCDDPEAAHEIWTYMLENHVKPLDESANALLIGLSNLGRLSELRRSAEEMLDGKIKIYEMTMMKLRDAFYKEGSRSARDRYDNLSRRWKARNLELTRL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01015 498 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 22 491 - -
Bva08g01015 498 Pfam PPR repeat family 317 366 IPR002885 -
Bva08g01015 498 PANTHER OSJNBA0019D11.15 PROTEIN 22 491 - -
Bva08g01015 498 Pfam PPR repeat 111 139 IPR002885 -
Bva08g01015 498 MobiDBLite consensus disorder prediction 1 33 - -
Bva08g01015 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Bva08g01015 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Bva08g01015 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Bva08g01015 498 Gene3D Tetratricopeptide repeat domain 77 190 IPR011990 GO:0005515
Bva08g01015 498 Gene3D Tetratricopeptide repeat domain 191 300 IPR011990 GO:0005515
Bva08g01015 498 Gene3D Tetratricopeptide repeat domain 329 494 IPR011990 GO:0005515
Bva08g01015 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Bva08g01015 498 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Bva08g01015 498 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Bva08g01015 498 Pfam Pentatricopeptide repeat domain 168 219 IPR002885 -
Bva08g01015 498 MobiDBLite consensus disorder prediction 14 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01015 Bva-Chr8 5198749 5201688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01015 142 494 Glycosyltransferase AT1G05670 24.933 1.85e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01015 - - gmx:100796114 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01015 08 5198749 5201688 Bva08g01015 08 5198749 5201688 ECH