Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01006 ATGAAAGCATGGGCAATTTGCCGACTGGTGCTAAAATCAACATTACATCATTCCCTTGAACACACGCGCATAGCAAGACCTCCATCATcacattttttctcttcccgAATCTGCAATAATGGAATTTTGGACTTCCCACAGCAATCCGTTTCATCAAATCCTTTGGTTTTCCCCATTCCAGGTGCTGACGCCCTGCTCTCGCATAGTTTTCGTTATTTTTACACGGTCTACCAACCACTCGGGGAAATGCCGAAGAGGGCTCTACATGAAAAAGATATCCATTTTGAGCTTCTTGTTGATCTTATTAAGTCCTGCAACAAAAGTCCGAAAATTGTAACTGCCACTCTTGCGCATTGCTTAGCTCTCAAGGTTGGGGCTATAGCTCACCTACCCATTTCAACATCTCTACTTACTATTTATTCTAAGGCTGGAGAATTCGAATCCTCGAAGGATTTGTTTGATGAGATTCACGACAGAGACGTGATTGCTTGGAATGCTATTATTGCTGCATCTGTTAGACATAACTGCCACAGGACGGCAACGGACTTCTTTGAGAAGATGATTGAAGCTGAAACTGGGTTTGATTCCACCACTCTATTGTTAATGGTATCAGCTTCATTATGCATTGGTAATTTTGAACAGGGACGAGCAATTCATTGTTTGAGTATAAAAACTGGGATGCTTGTTGATAATAGTTTATCTAATGCGCTAACGGATATGTATGCAAAGTGTGGTGATTTAAGCTCTTCGGAGTGTATGTTCGCAGGGATTGAATATAAAGATGCTGTTTCATGGAATTCAATAATGAGAGGATGTCTTTACAACAATGACCCAGAGAAATCATTATATTACTTTAAAGAGATGGTTTTATCTGGAGAAGAGGCAGACAACGTCAGTCTGTCGTGTGCTATCGCAGCATCTACTGCTCTAGGAGAGCTTGCTTTTGGCGAGTCTATTCATGGGCAGGGAATCAAACTGGGTTACAACGATAGCTCGCATGTTTCAGTTGGCAACGCTCTCATTTCATTATATTCACAATGTGGAGATGTTGAAGCTGCTGAGACTTTATTACGAGAAATGGTATACAAAGATATTGTTACATGGAATGCAATGATTGAAGGATATGcctcaaataaaaagattaatgaaGTATTTGATCTTCTGCTTGAAATGCAAACAGTGGGATCTTTCCAACCAGAGACAGTAACATTGTGTACCATACTCCCAGTTTGTGCAGAACTGAAACTCCTAAGAGAAGGAAGAACTATCCACGGATTTGCAGTTCGAAAACAAATGGTATCTGATCTTTCACTAATAAACTGCCTGACAGACATGTATTCCTCGTCCAATCGTATAGAGACAGCACAGCTCttgtttaattctttaaaagaGAGAGACTTGGTCTCTTGGAATGCAATGATATCAGGGTATTCTCAAAATGGGTTCTCTAAAGAAGCTAAAAATTTGTTCAGGGAGCTGCTCCGTTGTTGTCCAAACCACAACTCCTCCACTGTTTTTGCCGTTCTTTCTTCCTGCGACTCCCATGAAAGTCTTCACTTCGGAAAATCAATTCACTGCCGGCAGTTAAAATTGGGACTTTTGAACCATATTCTTTTAGTCAATTCCCTCATGCACACGTATATCAGTTGTGGAGACCTGAAAGTTGCTTTCTCAATTTTGCAAGAGAATTCTGCTTCAGCAGATACTGCTTCGTGGAACACTGTAATTGGTGGCTGTGTACGGAGTGACCGTTTTCAGGAGGCTCTAGAAACTTTTAGTTTAATGAGACAAGAACCTCTTGTCAACTATGATTCCATTACTCTTGTAAGTGTCTTGTCAGCCTGTGCAAATCTTGCGCTACTCAGTAATGGAAAATCCCTCCACGGGCTTGCTCTAAAATCTCCTTTGGGATCAGATACTCGTATTCAGAATTCGTTAATTACCATGTATGGAAGATGCAGGGACGTGGACAGTGCTAGAGCAGTGTTCAAATTCTTTTCTAGCCCCAATCTATGCTCATGGAATTGCATGATCTCTAGTTTATCTCAAAACAAAAGGAGCAAAGAAGCACTGGATATATTTCGTGATCTTCAGTTTGAACATAATGAGATCACCATTGTCAGCATTCTCTCTGCTTGTACTCAAATTGGAGTTTTAAGACATGGAAAAGAAGTTCATGCCCACGCCTTCAGATCTGGAATTCAGGATAATTCTTTCATATCTGCAGCTCTTGTAGACATGTATAGCAACTGTGGAAGATTAGACAATGCTGTCCAAGTATTTAGACATTCAAACGACAAGTCTGAAGCATGTTGGAATTCAATGATATCTGCCTATGGACATCATGGAAATGGTAAAAAAGCTGTGGAACTGTTCCATGAGATGTGGGAATCTGGAACCAGGGTGACCAAAAGCACTTTTGTTAGCCTGTTATCAGCTTGCAGCCATTCGGGACTCGTCAATGAAGGCGTTGGATACTATAACTGTATGTTGGAGAAATATGGAGTAGAAGCTGTGACTGAGCATCAAGTTTATGTAATCGACATGCTAGGTCGATCTGGTAGACTGGACGAggcttattattttatcaaggGGTTGAAGTTGCACACTCGTTCCAGTTCAGGTTTGTGGGGAAGCCTCTTAAGTGCTTGCAACTATCATGGAGAACTCAAGTTGGGCAAACAAGTTGCCCAACTTCTCTTTGAACTGGACCCTCAAAATGTTGGATATTACATTTCATTATCGAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCAACGGAGCTCAGACACACTATCCAGCAAAAGAGATTGAAGAATCCTCCAGGTTATAGTCTTATCGATGTTGGTTTGGGCTA 2861 0.402 MISGYSQNGFSKEAKNLFRELLRCCPNHNSSTVFAVLSSCDSHESLHFGKSIHCRQLKLGLLNHILLVNSLMHTYISCGDLKVAFSILQENSASADTASWNTVIGGCVRSDRFQEALETFSLMRQEPLVNYDSITLVSVLSACANLALLSNGKSLHGLALKSPLGSDTRIQNSLITMYGRCRDVDSARAVFKFFSSPNLCSWNCMISSLSQNKRSKEALDIFRDLQFEHNEITIVSILSACTQIGVLRHGKEVHAHAFRSGIQDNSFISAALVDMYSNCGRLDNAVQVFRHSNDKSEACWNSMISAYGHHGNGKKAVELFHEMWESGTRVTKSTFVSLLSACSHSGLVNEGVGYYNCMLEKYGVEAVTEHQVYVIDMLGRSGRLDEAYYFIKGLKLHTRSSSGLWGSLLSACNYHGELKLGKQVAQLLFELDPQNVGYYISLSNMYVAAGSWKDATELRHTIQQKRLKNPPGYSLIDVGLG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01006 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Bva08g01006 481 TIGRFAM PPR: pentatricopeptide repeat domain 299 329 IPR002885 -
Bva08g01006 481 TIGRFAM PPR: pentatricopeptide repeat domain 99 125 IPR002885 -
Bva08g01006 481 TIGRFAM PPR: pentatricopeptide repeat domain 201 226 IPR002885 -
Bva08g01006 481 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Bva08g01006 481 Gene3D Tetratricopeptide repeat domain 252 352 IPR011990 GO:0005515
Bva08g01006 481 Pfam E motif 415 476 IPR046848 -
Bva08g01006 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Bva08g01006 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Bva08g01006 481 PANTHER OS01G0938000 PROTEIN 1 94 - -
Bva08g01006 481 PANTHER OS07G0578800 PROTEIN-RELATED 96 477 IPR045215 GO:0003723|GO:0009451
Bva08g01006 481 SUPERFAMILY TPR-like 276 457 IPR011990 GO:0005515
Bva08g01006 481 Pfam PPR repeat family 297 343 IPR002885 -
Bva08g01006 481 PANTHER OS07G0578800 PROTEIN-RELATED 1 94 IPR045215 GO:0003723|GO:0009451
Bva08g01006 481 Gene3D Tetratricopeptide repeat domain 359 476 IPR011990 GO:0005515
Bva08g01006 481 Gene3D Tetratricopeptide repeat domain 148 251 IPR011990 GO:0005515
Bva08g01006 481 PANTHER OS01G0938000 PROTEIN 96 477 - -
Bva08g01006 481 Pfam PPR repeat 99 126 IPR002885 -
Bva08g01006 481 Pfam PPR repeat 201 225 IPR002885 -
Bva08g01006 481 Pfam PPR repeat 172 192 IPR002885 -
Bva08g01006 481 Pfam PPR repeat 1 24 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01006 Bva-Chr8 5131066 5133927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01006 1 479 Glycoside Hydrolase AT3G49170 30.879 4.57e-80 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01006 - - gmx:100775736 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01006 08 5131066 5133927 Bva08g01006 08 5131066 5133927 ECH